View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_high_15 (Length: 279)

Name: NF10178_high_15
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_high_15
NF10178_high_15
[»] chr4 (4 HSPs)
chr4 (1-266)||(33735636-33735901)
chr4 (78-266)||(33720982-33721170)
chr4 (57-266)||(33718963-33719172)
chr4 (78-266)||(33750436-33750624)
[»] chr3 (1 HSPs)
chr3 (217-266)||(45013999-45014048)
[»] chr7 (2 HSPs)
chr7 (214-266)||(6568891-6568943)
chr7 (214-266)||(6583050-6583102)
[»] chr1 (2 HSPs)
chr1 (219-251)||(50102277-50102309)
chr1 (219-252)||(47424881-47424914)
[»] chr8 (1 HSPs)
chr8 (217-252)||(8584915-8584950)
[»] chr5 (1 HSPs)
chr5 (223-263)||(2361316-2361356)
[»] chr2 (1 HSPs)
chr2 (148-248)||(45437332-45437432)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33735901 - 33735636
Alignment:
Q  1 tcaatttgtatttcttgattcatattctcgtcctttatatcctccaaagggacagccacttctggatccaccacgttcttaagcgattcatcaacgactg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33735901 tcaatttgtatttcttgattcatattctcgtcctttatatcctccaaagggacaaccacttctggatccaccacgttcttaagcgattcatcaacgactg 33735802  T
Q  101 gaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735801 gaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacg 33735702  T
Q  201 gaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735701 gaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 33735636  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 33721170 - 33720982
Alignment:
Q  78 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 177  Q
    |||||| ||||||||||| | ||||||||| |||||||| || ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  33721170 cttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtg 33721071  T
Q  178 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 266  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33721070 gtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctct 33720982  T

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Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 57 - 266
Target Start/End: Complemental strand, 33719172 - 33718963
Alignment:
Q  57 cacttctggatccaccacgttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagct 156  Q
    ||||||||| ||| | || | |||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || || |||||||| ||||||    
T  33719172 cacttctggttcctcaacatgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagct 33719073  T
Q  157 ctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcc 256  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  33719072 ctggcagcttcctccgccgtggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtc 33718973  T
Q  257 tcactcctct 266  Q
    ||||||||||    
T  33718972 tcactcctct 33718963  T

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Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 33750624 - 33750436
Alignment:
Q  78 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 177  Q
    |||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  33750624 cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg 33750525  T
Q  178 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 266  Q
    | ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||| |||||||| || || |||||||||||    
T  33750524 gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 33750436  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 45013999 - 45014048
Alignment:
Q  217 tcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 266  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  45013999 tcacgaatctctgcagcccactttccccatggcctctgcctcacacctct 45014048  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  214 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 266  Q
    |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  214 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 266  Q
    |||||||| || ||||| ||||||||||||||||| || || |||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 50102277 - 50102309
Alignment:
Q  219 acgaatctcagcagcccattttccccatggcct 251  Q
    |||||||||||||||||||||||||||||||||    
T  50102277 acgaatctcagcagcccattttccccatggcct 50102309  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 47424914 - 47424881
Alignment:
Q  219 acgaatctcagcagcccattttccccatggcctc 252  Q
    ||||||||||||||||||| ||||||||||||||    
T  47424914 acgaatctcagcagcccatcttccccatggcctc 47424881  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 8584950 - 8584915
Alignment:
Q  217 tcacgaatctcagcagcccattttccccatggcctc 252  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8584950 tcacgaatctcagcagcccatttgccccatggcctc 8584915  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 2361316 - 2361356
Alignment:
Q  223 atctcagcagcccattttccccatggcctctgcctcactcc 263  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  2361316 atctccgccgcccattttccccatggtctctgcctcactcc 2361356  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 45437432 - 45437332
Alignment:
Q  148 tcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatg 247  Q
    ||||| ||||| |||||||| || || ||| | || ||||| ||||||||||| ||  |   ||| |||||||| |||||||| ||||||||||||||||    
T  45437432 tcgtaggctcttgcagcttcttcagcagtgttgaaagttccgagccaaacacgaactccttttctcgggtcacggatctcagctgcccattttccccatg 45437333  T
Q  248 g 248  Q
    |    
T  45437332 g 45437332  T

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