View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_high_17 (Length: 263)

Name: NF10178_high_17
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_high_17
NF10178_high_17
[»] chr6 (15 HSPs)
chr6 (69-234)||(1831964-1832129)
chr6 (17-223)||(6465119-6465325)
chr6 (18-233)||(6526156-6526374)
chr6 (19-233)||(6457161-6457375)
chr6 (18-211)||(1841986-1842179)
chr6 (17-234)||(6473218-6473435)
chr6 (18-234)||(1839061-1839279)
chr6 (73-201)||(1827215-1827343)
chr6 (49-205)||(1845847-1846002)
chr6 (177-234)||(13035917-13035974)
chr6 (18-100)||(1828190-1828272)
chr6 (185-233)||(1822322-1822370)
chr6 (43-221)||(6516295-6516473)
chr6 (196-234)||(1827168-1827206)
chr6 (18-227)||(6505267-6505476)
[»] chr7 (4 HSPs)
chr7 (132-218)||(46383318-46383404)
chr7 (145-230)||(3754007-3754092)
chr7 (154-230)||(4046155-4046231)
chr7 (155-221)||(46383849-46383914)
[»] chr1 (1 HSPs)
chr1 (17-61)||(35231781-35231825)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 1832129 - 1831964
Alignment:
Q  69 gtaattagagtttgaatttctactcaaggtcataaaatccgccgtaagagaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgca 168  Q
    |||||| ||||||||||||||||||||||||||||||||| |  | || |||||||| | |||||||||||   ||||||||||||||||||| ||||||    
T  1832129 gtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatactctctaccccaaattggatcaatctttgca 1832030  T
Q  169 agcactgtaattccaaagagaaagtatcctaaatgataatgatggtcattataaattccaaacccg 234  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  1832029 agcactgcaattccaaagagaaagtatcctaaatgataatgatggtcgttattaattccaaacccg 1831964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 6465119 - 6465325
Alignment:
Q  17 accctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaag 116  Q
    ||||||| ||||| || || |||||| |||||||||||||||||| |||  ||||||| ||||| | |||||| |||||| |||||||||| ||| | ||    
T  6465119 accctccggcccacgaatgcaatttaaaaagatcgaaacaccttagacgggtgtaattcgagttcggatttctgctcaagttcataaaatcagccatgag 6465218  T
Q  117 agaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtca 216  Q
     ||||| || | ||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||| |||    
T  6465219 tgaataagcttgaggcttatacttcctaccccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatca 6465318  T
Q  217 ttataaa 223  Q
    |||||||    
T  6465319 ttataaa 6465325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 6526156 - 6526374
Alignment:
Q  18 ccctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaat---tagagtttgaatttctactcaaggtcataaaatccgccgta 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | || ||||||   ||| |||||||||||| ||||   |||||||||| ||| |     
T  6526156 ccctccagcccaagagtgtaatttatacagatcgaaacaccttagatgcgtgtaataactagggtttgaatttctgctcagattcataaaatcagccatg 6526255  T
Q  115 agagaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggt 214  Q
    | ||||||||| | || |||||||||  |||||||||| |||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  6526256 acagaataggcttgagacttatactttctaccccaaataggatcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatgat 6526355  T
Q  215 cattataaattccaaaccc 233  Q
    ||||||||| ||| |||||    
T  6526356 cattataaactccgaaccc 6526374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 6457161 - 6457375
Alignment:
Q  19 cctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaagag 118  Q
    |||||||||||||| || ||||||||||||||||||||||||| |||  | ||||| |||||||| ||||| |  ||| |||  ||||| ||| | || |    
T  6457161 cctccagcccaagaatgaaatttataaagatcgaaacaccttaaacgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccatgagtg 6457260  T
Q  119 aataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcatt 218  Q
    |||| || | ||| ||||||||  | ||||||  ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  6457261 aataagcttgaggtttatactttcttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcatt 6457360  T
Q  219 ataaattccaaaccc 233  Q
    |||||| || |||||    
T  6457361 ataaataccgaaccc 6457375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 1842179 - 1841986
Alignment:
Q  18 ccctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaaga 117  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||  | | ||     
T  1842179 ccctccagctcaagagtgtaatttacaaagatcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaaatccttcatgagt 1842080  T
Q  118 gaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgat 211  Q
    ||||   | | || || |||||| ||| |||||||||||||||| || ||| ||| || ||||||| |||||||||| | ||||||||| ||||    
T  1842079 gaatccacttgagtctcatactttgtatcccaaattggatcaatcttagcatgcaatgcaattccatagagaaagtaacttaaatgatattgat 1841986  T

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Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 6473435 - 6473218
Alignment:
Q  17 accctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaag 116  Q
    ||||||| |||||||| || | ||| |||||||| |||||||||| | |  | ||||| || || || ||| | |||||||||||||||||  || | ||    
T  6473435 accctccggcccaagaatgcagtttgtaaagatcaaaacaccttaaaggagtataatttgaattcgagtttttgctcaaggtcataaaatcttccatgag 6473336  T
Q  117 agaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtca 216  Q
     | |||||| | ||||||||| ||| ||||||||| ||||||||| || |||||||||| ||||||| |||||||||| ||||||||||||||||| |||    
T  6473335 tgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatgatca 6473236  T
Q  217 ttataaattccaaacccg 234  Q
    ||||||||||| ||||||    
T  6473235 ttataaattccgaacccg 6473218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 1839279 - 1839061
Alignment:
Q  18 ccctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaaga 117  Q
    |||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||||||  ||||||||||||  ||  | ||     
T  1839279 ccctccggcccaagagtgtaatttataaagatctaaacaccttagacacatgtaattagagttcgaatttctacttgaggtcataaaatttgcaatgagt 1839180  T
Q  118 gaataggcgtaaggc----ttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatgg 213  Q
    |||||||  | ||||    ||| | ||  ||||||||||||||||||| ||||   |||||| |||||   ||||||| ||||||||||||||||||||     
T  1839179 gaataggtttgaggcttaattaaattttataccccaaattggatcaatctttg--tgcactgcaattcattagagaaactatcctaaatgataatgatgc 1839082  T
Q  214 tcattataaattccaaacccg 234  Q
    |||| ||||||||||||||||    
T  1839081 tcatcataaattccaaacccg 1839061  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 1827343 - 1827215
Alignment:
Q  73 ttagagtttgaatttctactcaaggtcataaaatccgccgtaagagaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagca 172  Q
    |||||||| |||||||||||| ||||||||||||| ||  | || |||||||| | ||||||||| ||  |||||||||||| |||||| ||||||||||    
T  1827343 ttagagttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttatattttctaccccaaattgaatcaatctttgcaagca 1827244  T
Q  173 ctgtaattccaaagagaaagtatcctaaa 201  Q
    ||| ||||| | |||||||||||||||||    
T  1827243 ctgcaattcgatagagaaagtatcctaaa 1827215  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 1846002 - 1845847
Alignment:
Q  49 tcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaagagaataggcgtaaggcttatacttcgtacccc 148  Q
    |||||| || ||| || ||||||||||||||||||||||||||||| |||||||||||| ||  | ||  ||||||| | ||||||| | ||   |||||    
T  1846002 tcgaaatacattagacacatgtaattagagtttgaatttctactca-ggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccacccc 1845904  T
Q  149 aaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgat 205  Q
    ||||||||||||| ||||||||||||| |||| |  |||||||||||| ||||||||    
T  1845903 aaattggatcaatctttgcaagcactgaaatttcgtagagaaagtatcgtaaatgat 1845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 13035974 - 13035917
Alignment:
Q  177 aattccaaagagaaagtatcctaaatgataatgatggtcattataaattccaaacccg 234  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13035974 aattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccg 13035917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 1828272 - 1828190
Alignment:
Q  18 ccctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtca 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| | || | ||||||||  ||| || ||||||||||||||||    
T  1828272 ccctccggcccaagagtgtaatttataaagatcgaaacacctcagacacgtgtaattattgttagagtttctactcaaggtca 1828190  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 1822370 - 1822322
Alignment:
Q  185 agagaaagtatcctaaatgataatgatggtcattataaattccaaaccc 233  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  1822370 agagaaagtattctaaatgataatgatggtcattataaattcaaaaccc 1822322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 6516473 - 6516295
Alignment:
Q  43 taaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaagagaataggcgtaaggcttatacttcg 142  Q
    |||||||||||| |||||| |||| | ||||| ||||| || |||  ||| ||| ||||||| ||  || |||| |||||||  |    ||||||||||     
T  6516473 taaagatcgaaaaaccttaaacgcgtataatttgagttcgattttaaacttaagttcataaagtcttccataagtgaataggattgtttcttatacttcc 6516374  T
Q  143 taccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcattata 221  Q
    |||||||   ||||||||| ||  ||||||||| ||||||| | ||||| |||||||| ||||||||||| ||||||||    
T  6516373 taccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata 6516295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 1827206 - 1827168
Alignment:
Q  196 cctaaatgataatgatggtcattataaattccaaacccg 234  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  1827206 cctaaatgataatgatggtcgttataaattccaaacccg 1827168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 6505267 - 6505476
Alignment:
Q  18 ccctccagcccaagagtgtaatttataaagatcgaaacaccttacacgcatgtaattagagtttgaatttctactcaaggtcataaaatccgccgtaaga 117  Q
    |||||| ||||| || || || || ||||||||||||||||||| |||| | ||||| ||||| || | | | || ||| ||||||||||  ||  |||     
T  6505267 ccctccggcccacgaatgcaacttgtaaagatcgaaacaccttaaacgcgtataatttgagttcgattctatgcttaagttcataaaatcttccacaagt 6505366  T
Q  118 gaataggcgtaaggcttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcat 217  Q
    |||||||| | || |||||| ||| |||||||  ||||||| || ||| |||||||||  ||| |  | ||||| |||||||| ||| | ||||| ||||    
T  6505367 gaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaatatcctaagtgaaagtgatgatcat 6505466  T
Q  218 tataaattcc 227  Q
    | ||||||||    
T  6505467 tgtaaattcc 6505476  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 46383318 - 46383404
Alignment:
Q  132 cttatacttcgtaccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcatt 218  Q
    |||||||||| |||||||||| |||||||| || || ||||||||||||||| ||||| | |||||||||||||||||||| |||||    
T  46383318 cttatacttcctaccccaaataggatcaatcttggcgagcactgtaattccatagagagaatatcctaaatgataatgatgatcatt 46383404  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 3754092 - 3754007
Alignment:
Q  145 ccccaaattggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcattataaattccaaa 230  Q
    ||||||| ||||||||| |||||||| || | ||||||| | ||||| || ||||||||||||||||| |||||||||||||||||    
T  3754092 ccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattataaattccaaa 3754007  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 4046155 - 4046231
Alignment:
Q  154 ggatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcattataaattccaaa 230  Q
    |||||||| |||||||| |||  ||||||| | ||||| || ||||||||||||||||| |||||||| ||||||||    
T  4046155 ggatcaatttttgcaagaactccaattccataaagaaaataacctaaatgataatgatgatcattatacattccaaa 4046231  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 46383849 - 46383914
Alignment:
Q  155 gatcaatgtttgcaagcactgtaattccaaagagaaagtatcctaaatgataatgatggtcattata 221  Q
    ||||||| || |||||||| | ||||||| ||||||| ||||||||||||| |||||| ||||||||    
T  46383849 gatcaatcttagcaagcac-gcaattccatagagaaaatatcctaaatgatgatgatgatcattata 46383914  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35231825 - 35231781
Alignment:
Q  17 accctccagcccaagagtgtaatttataaagatcgaaacacctta 61  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||    
T  35231825 accctccagcccaagagtgaaacttatatagatcgaaacacctta 35231781  T

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