View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_high_19 (Length: 227)
Name: NF10178_high_19
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_high_19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 28608003 - 28608208
Alignment:
| Q |
1 |
actcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608003 |
actcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaat |
28608102 |
T |
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| Q |
101 |
acaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactaccttttttaataactca |
200 |
Q |
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| T |
28608103 |
acaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactcccttttttaataactca |
28608202 |
T |
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| Q |
201 |
cacttc |
206 |
Q |
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|||||| |
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| T |
28608203 |
cacttc |
28608208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 7589567 - 7589432
Alignment:
| Q |
13 |
tgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtc |
112 |
Q |
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| T |
7589567 |
tgttcaaaagattctaaacactttgtttgccagtttcttttttggcgtacgtgttc-agatggttttgctttagacttgcttcttaatactaaaggtgtc |
7589469 |
T |
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| Q |
113 |
gttgcattaataatgctcaacatttcatgggatagaa |
149 |
Q |
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| T |
7589468 |
gctgcgttgataatgctcaacattgattgggatagaa |
7589432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 438900 - 438704
Alignment:
| Q |
1 |
actcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaat |
100 |
Q |
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||||||| ||||||||| ||||||| |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
438900 |
actcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggcatgcgtgctcaagatggttttgctctaggcttgcttctcaat |
438801 |
T |
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| Q |
101 |
acaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactaccttttttaataac |
197 |
Q |
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| T |
438800 |
accaagggtgtcgttgcactgataatgctcaatatttcctgggatagatcggtattgatctacttgaaaattattatttactcccttttttaataac |
438704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 13651902 - 13652025
Alignment:
| Q |
11 |
tgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtg |
110 |
Q |
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| T |
13651902 |
tgtgttccaaagattttaagcactttgtttaccactttattttttggcatgcgtactcaagacagttttgctctaggcatgattctcaatactaagggtg |
13652001 |
T |
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| Q |
111 |
tcgttgcattaataatgctcaaca |
134 |
Q |
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| T |
13652002 |
cccttgcattgataatgctcaaca |
13652025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 13659388 - 13659536
Alignment:
| Q |
11 |
tgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtg |
110 |
Q |
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||||||| |||||| |||||||||||||| | |||||||| ||||| |||||||||| ||| |||| ||| | ||| || |||||||||||||||||| |
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| T |
13659388 |
tgtgttccgaagattttaagcactttgtttgctactttcttttttggtatgcgtactcaagacagtttagctctcggcatgattctcaatacaaagggtg |
13659487 |
T |
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| Q |
111 |
tcgttgcattaataatgctcaacatttcatgggatagaatggtattgat |
159 |
Q |
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| T |
13659488 |
cccttgcactgataatgctcaacacatcttgggatagaaaagtattgat |
13659536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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