View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_high_20 (Length: 227)
Name: NF10178_high_20
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23178397 - 23178171
Alignment:
| Q |
1 |
gttataattatcaaaatttttataagaatcctcggttgatgtgatggttagagtcgatacttgatcattccataacatgcaggcaccgttnnnnnnntca |
100 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
23178397 |
gttataattatcaatatttttataagaatccccggttgatgtgatggttagagtcggtacttgatcattccataacatgcaggcaccgtcaaaaaaatca |
23178298 |
T |
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| Q |
101 |
taagcataagcaacacaagagcaatcattgaagcaagtataattacactgtgctgcggtatccaccagcctgtgcacacgatgacgtcgaagtgatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23178297 |
taagcataagcaacacaagagcaatcattgaagcaagtataattacactgtgctccggtatccaccagcctgtgcacacgatgacgtcgaagtgatttca |
23178198 |
T |
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| Q |
201 |
ctgacatattaaaggatgagaaatatc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23178197 |
ctgacatattaaaggatgagaaatatc |
23178171 |
T |
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