View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_high_5 (Length: 393)
Name: NF10178_high_5
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 27146823 - 27146447
Alignment:
| Q |
1 |
agaatatagatttttagctaacactactacttgattatcacttagttagctgcaacacctctcatttctaccgataatctaagtgctacatatctcactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27146823 |
agaatatagatttttagctaacactactacttgattatcacttagttagctgcaacacctctcatttctaccgataatctaagtgctacatatctcgctc |
27146724 |
T |
|
| Q |
101 |
aaaatcaagtatacaacacttgcatgaagcacatatccat----tgacatgcaattagtatgtgatctggtacaacaatgatgaaaagatcaaagttcaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27146723 |
aaaatcaagtatacaacacttgcatgaagcacatatccatccattgacatgcaattagtatgtgatctggtacaacaatgatgaaaagatcaaagtttaa |
27146624 |
T |
|
| Q |
197 |
caactcagcatcactgatgagctagtaagttgtcttacaaaaccacactctaaatctcgtcatcaatacttacaaaacaaatttggcgtttccaataaca |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27146623 |
caactcagcatcactgatgagctagtaagttgtcttacaaaaccacactctaaatctcgtcatcaatacttacaaaacaagtttggcgtttccaataaca |
27146524 |
T |
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| Q |
297 |
ctccaatctagtagagcatgttagacaatgcattcattaccaatcaattagcaaataaaaatgatttcattcgttaact |
375 |
Q |
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| T |
27146523 |
ctccaatc--gtagagcatgttagacaatgcattcattaccaatcaattagcaaataaaaatgatttcattcattaact |
27146447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 5402938 - 5403008
Alignment:
| Q |
76 |
aatctaagtgctacatatctcactcaaaatcaagtatacaacacttgcatgaagcacatatccattgacat |
146 |
Q |
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| T |
5402938 |
aatctcagtgccacatatcttactcaaaatccggtatatcacactcgcatgaaacacatctccattgacat |
5403008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 3543925 - 3543995
Alignment:
| Q |
76 |
aatctaagtgctacatatctcactcaaaatcaagtatacaacacttgcatgaagcacatatccattgacat |
146 |
Q |
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| T |
3543925 |
aatctcagtgccacatatcttactcaaaatccggtatatcacactcgcatgaaacacatctccattgacat |
3543995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 34695839 - 34695769
Alignment:
| Q |
76 |
aatctaagtgctacatatctcactcaaaatcaagtatacaacacttgcatgaagcacatatccattgacat |
146 |
Q |
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||||| ||||| |||||||| |||||||||| ||||| ||||| ||||||| ||||| ||||||||||| |
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| T |
34695839 |
aatctcagtgccacatatcttactcaaaatccggtatatcacactcgcatgaaacacatctccattgacat |
34695769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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