View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_high_6 (Length: 377)

Name: NF10178_high_6
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_high_6
NF10178_high_6
[»] chr3 (3 HSPs)
chr3 (24-369)||(18039927-18040274)
chr3 (91-193)||(13603460-13603561)
chr3 (56-212)||(28469320-28469478)
[»] chr4 (4 HSPs)
chr4 (24-219)||(52296533-52296730)
chr4 (116-219)||(20866892-20866994)
chr4 (56-212)||(21531415-21531573)
chr4 (116-219)||(772175-772278)
[»] chr6 (1 HSPs)
chr6 (27-219)||(5488217-5488411)
[»] chr1 (2 HSPs)
chr1 (275-369)||(20501124-20501218)
chr1 (26-186)||(23951045-23951209)
[»] chr7 (2 HSPs)
chr7 (275-366)||(16544453-16544544)
chr7 (275-366)||(16621118-16621209)
[»] chr8 (1 HSPs)
chr8 (25-219)||(4838767-4838965)
[»] chr2 (3 HSPs)
chr2 (275-369)||(31355990-31356084)
chr2 (115-163)||(17686485-17686533)
chr2 (102-155)||(21322117-21322170)
[»] chr5 (1 HSPs)
chr5 (97-186)||(17639228-17639316)
[»] scaffold1120 (1 HSPs)
scaffold1120 (117-163)||(286-332)
[»] scaffold0007 (1 HSPs)
scaffold0007 (296-332)||(20537-20573)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 18039927 - 18040274
Alignment:
Q  24 tttctttcgtttatttcgtgttcttcttttcttagaagcttagatccggacttttgtaggtt--gtttcaaaaagattttcgaaagtttaaacttagatc 121  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18039927 tttctttcgtttatttcgtgttcttctttgcttagaagcttagatccggacttttgtaggttttgtttcaaaaagattttcgaaagtttaaacttagatc 18040026  T
Q  122 tagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaatcggcggtg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18040027 tagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgtttaaaaaggtagtctgtttttgaatcggcggtg 18040126  T
Q  222 ttaacatatatataatacctcttaatcctatgctcgctcctgtttcctgttaccatgctcccttatgtttttgtgccaccagatctggatagttccacga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18040127 ttaacatatatataatacctcttaatcctatgctcgctcctgtttcctgttaccatgctccctcatgtttttgtgccaccagatctggatagttccacga 18040226  T
Q  322 tctgatggctattgttgaaactgtcttttaatctggtgcgcctttgct 369  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  18040227 tctgatggctattgttgaaattgtcttttaatctggtgcgcctttgct 18040274  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 13603561 - 13603460
Alignment:
Q  91 aaaaagattttcgaaagtttaaacttagatctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgttt 190  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||| | |||||||||||||| |||||||||||||    
T  13603561 aaaaagattttcgaaagtttgaacttagatctagaagtttgggttgtttgtttgtgaaaactaagtaga-tctttggaaagaggagaaaaaaggatgttt 13603463  T
Q  191 aaa 193  Q
    |||    
T  13603462 aaa 13603460  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 28469478 - 28469320
Alignment:
Q  56 tagaagcttagatccggact-tttgtaggtt--gtttcaaaaagattttcgaaagtttaaacttagatctagaagttttggttgtttatttgtgataact 152  Q
    |||||||| | ||||||||| ||||||||||  |||||||||   ||||  ||| ||| || ||||||||||||||||||||||||| ||||| | ||||    
T  28469478 tagaagctcaaatccggactgtttgtaggttttgtttcaaaagatttttaaaaaatttgaatttagatctagaagttttggttgtttgtttgtaaaaact 28469379  T
Q  153 aagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaa 212  Q
    ||||||| | |||| |  |||||| |||||||||||||||| ||||| | ||||||||||    
T  28469378 aagtaga-tatttgaattgaggagaaaaaaggatgtttaaaaaggtaatttgtttttgaa 28469320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 52296533 - 52296730
Alignment:
Q  24 tttctttcgtttatttcgtgttcttcttttcttagaagcttagatccggactttt-gtaggtt--gtttcaaaaagattttcgaaagtttaaacttagat 120  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| ||  |||||||||||||||||  |||||| |||||||||    
T  52296533 tttctttcgtttatttcgtgttcttctttgcttagtagtttagatccggactttttgtagattttgtttcaaaaagattttcagaagtttgaacttagat 52296632  T
Q  121 ctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaatcggcgg 219  Q
    ||||||||||||||||||| ||||| | ||||||||||| | | || |  |||||| |||||||||||||||| ||||| | |||||||||||||||||    
T  52296633 ctagaagttttggttgtttgtttgtaaaaactaagtaga-tatctgaattgaggagaaaaaaggatgtttaaaaaggtaatttgtttttgaatcggcgg 52296730  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 20866994 - 20866892
Alignment:
Q  116 tagatctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaatcg 215  Q
    |||||||||||||||||||||||| ||||| | |||||||| ||| ||| | ||||||||| ||||||||| |||||| || |||| |||||||||||||    
T  20866994 tagatctagaagttttggttgtttgtttgtaaaaactaagtggatattt-gaaaagaggagaaaaaaggatttttaaaaagatagtttgtttttgaatcg 20866896  T
Q  216 gcgg 219  Q
    ||||    
T  20866895 gcgg 20866892  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 21531573 - 21531415
Alignment:
Q  56 tagaagcttagatccggact-tttgtaggtt--gtttcaaaaagattttcgaaagtttaaacttagatctagaagttttggttgtttatttgtgataact 152  Q
    |||||||| | ||||||||| ||||||||||  |||||||||   ||||  ||| ||| || ||||||||||||||||||||||||| ||||| | ||||    
T  21531573 tagaagctcaaatccggactgtttgtaggttttgtttcaaaagatttttaaaaaatttgaatttagatctagaagttttggttgtttgtttgtaaaaact 21531474  T
Q  153 aagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaa 212  Q
    ||||||| | |||| |  |||||| |||||||||||||||| ||||| | ||||||||||    
T  21531473 aagtaga-tatttgaattgaggagaaaaaaggatgtttaaaaaggtaatttgtttttgaa 21531415  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 772175 - 772278
Alignment:
Q  116 tagatctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgttt--aaataggtagtctgtttttgaat 213  Q
    |||||||||||||||||||||||| ||||| | |||||||| || | |||| ||||| ||| ||||||||| |||  ||| || |||| |||||||||||    
T  772175 tagatctagaagttttggttgtttgtttgtaaaaactaagtgga-tatttgaaaaga-gagaaaaaaggatttttaaaaaaagatagtttgtttttgaat 772272  T
Q  214 cggcgg 219  Q
     |||||    
T  772273 tggcgg 772278  T

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Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 5488411 - 5488217
Alignment:
Q  27 ctttcgtttatttcgtgttcttcttttcttagaagcttagatccggactttt-gtaggtt--gtttcaaaaagattttcgaaagtttaaacttagatcta 123  Q
    ||||| |||||||||||||||||||| ||||| || |||||||||||||||| |||||||  |||||||||||||||||  |||||| ||||||||||||    
T  5488411 ctttcatttatttcgtgttcttctttgcttagtagtttagatccggactttttgtaggttttgtttcaaaaagattttcagaagtttgaacttagatcta 5488312  T
Q  124 gaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaatcggcgg 219  Q
     ||||||||||||||| ||||| | |||||||| || | |||| ||||||||| ||||||||| |||||| || |||| |||||||||||||||||    
T  5488311 caagttttggttgtttgtttgtaaaaactaagtgga-tatttgaaaagaggagaaaaaaggatttttaaaaagatagtttgtttttgaatcggcgg 5488217  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 20501124 - 20501218
Alignment:
Q  275 catgctcccttatgtttttgtgccaccagatctggatagttccacgatctgatggctattgttgaaactgtcttttaatctggtgcgcctttgct 369  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20501124 catgctccctcatgtttttgtgccaccagatcttgatagttccacgatctgatggctgttgttgaaactgtcttttaatctggtgcgcctttgct 20501218  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 23951045 - 23951209
Alignment:
Q  26 tctttcgtttatttcgtgttcttcttttcttagaagcttagatccggac--ttttgtagg--ttgtttcaaaaagat-tttcgaaagtttaaacttagat 120  Q
    |||||| |||||||||||||||||||| |||||||| |||||||| |||   ||||||||  |||||||||||   | ||   ||||||| || ||||||    
T  23951045 tctttcatttatttcgtgttcttctttgcttagaagtttagatccagacatctttgtaggttttgtttcaaaagtttgttaaaaaagtttgaatttagat 23951144  T
Q  121 ctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggat 186  Q
    |||||||||||| |||||| ||||| | |||||||| || | |||| |||| |||| |||||||||    
T  23951145 ctagaagttttgattgtttgtttgtaaaaactaagt-gaatatttgaaaagcggagaaaaaaggat 23951209  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 16544453 - 16544544
Alignment:
Q  275 catgctcccttatgtttttgtgccaccagatctggatagttccacgatctgatggctattgttgaaactgtcttttaatctggtgcgccttt 366  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16544453 catgctccctcatgtttttgtgccaccagatctggataattccacgatctgatggctgttgttgaaactgtcttttaatctggtgcgccttt 16544544  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 16621209 - 16621118
Alignment:
Q  275 catgctcccttatgtttttgtgccaccagatctggatagttccacgatctgatggctattgttgaaactgtcttttaatctggtgcgccttt 366  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16621209 catgctccctcatgtttttgtgccaccagatctggataattccacgatctgatggctgttgttgaaactgtcttttaatctggtgcgccttt 16621118  T

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Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 4838965 - 4838767
Alignment:
Q  25 ttctttcgtttatttcgtgttcttcttttcttagaagcttagatccggactttt--gtaggtt--gtttcaaaa-agattttcgaaagtttaaacttaga 119  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||| |||||||  |||||||  ||||||||| |  ||||  ||| ||| || |||||    
T  4838965 ttctttcatttatttcgtgttcttctttgcttagaagtttagatccagacttttttgtaggttttgtttcaaaagattttttaaaaaatttgaatttaga 4838866  T
Q  120 tctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggatgtttaaataggtagtctgtttttgaatcggcgg 219  Q
    |||||||||||||||||||| ||||| | ||||||||||| | |||| |  |||||| |||||||||||||||| ||||| | |||||||||||||||||    
T  4838865 tctagaagttttggttgtttgtttgtaaaaactaagtaga-tatttgaattgaggagaaaaaaggatgtttaaaaaggtaatttgtttttgaatcggcgg 4838767  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 275 - 369
Target Start/End: Complemental strand, 31356084 - 31355990
Alignment:
Q  275 catgctcccttatgtttttgtgccaccagatctggatagttccacgatctgatggctattgttgaaactgtcttttaatctggtgcgcctttgct 369  Q
    |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  31356084 catgctccttcatgtttttgcgccaccagatctggatagttccacgatctgatggccattgttgaaactatcttttaatctggtgcgcccttgct 31355990  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 17686533 - 17686485
Alignment:
Q  115 ttagatctagaagttttggttgtttatttgtgataactaagtagatttt 163  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  17686533 ttagatctagaagttttggttgtttgtttgtgaaaactaagtagatttt 17686485  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 21322170 - 21322117
Alignment:
Q  102 cgaaagtttaaacttagatctagaagttttggttgtttatttgtgataactaag 155  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  21322170 cgaaagtttgaacttagatctagaagtttgggttgtttgtttgtgaaaactaag 21322117  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 17639228 - 17639316
Alignment:
Q  97 attttcgaaagtttaaacttagatctagaagttttggttgtttatttgtgataactaagtagattttttggaaagaggaggaaaaaggat 186  Q
    |||||||||| ||  |||||||||||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  17639228 attttcgaaacttgtaacttagatctaaaagtttaggttgtttgtttgtgaaaactaagtaga-tttttggaaagaggaagaaaaaggat 17639316  T

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Target: scaffold1120 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 286 - 332
Alignment:
Q  117 agatctagaagttttggttgtttatttgtgataactaagtagatttt 163  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||||    
T  286 agatctagaagttttggttgtttgtttgtgaaaattaagtagatttt 332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 20573 - 20537
Alignment:
Q  296 gccaccagatctggatagttccacgatctgatggcta 332  Q
    |||| |||||||||||||||||| |||||||||||||    
T  20573 gccatcagatctggatagttccaagatctgatggcta 20537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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