View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_high_8 (Length: 369)
Name: NF10178_high_8
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 38806348 - 38806690
Alignment:
| Q |
18 |
attattaaacactgttcttgaggatgtaatgcagttttttataccctaccataacgaaatggaaagaaagatcttcgacccctgttactactgctattac |
117 |
Q |
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| T |
38806348 |
attattaaacactgttcttgaggatgtaatgcagttttttataccctaccataacgaaatggaaagaaagatcttcgacccctgttactactgctattac |
38806447 |
T |
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| Q |
118 |
aatcttcatagctacagccctcactgttgattccaaaatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacataagcttttct |
217 |
Q |
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| T |
38806448 |
aatcttcatagttacagccctcactgttgattccacaatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacataagcttttct |
38806547 |
T |
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| Q |
218 |
atcacttgcagaatccaatgagaaggatcttctgataggctgaattgaaaactgatcatcnnnnnnnctaacatcaatacactcatcatccattatggta |
317 |
Q |
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| T |
38806548 |
atcacttgcagaatccaatgagaaggatcttctgataggctgaattgaaaactgatcatctttttttctaacatcaatacactcatcatccattatggta |
38806647 |
T |
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| Q |
318 |
ccatggtggcacttccatgttttcaactgcactgccttcttct |
360 |
Q |
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| T |
38806648 |
ccatggtggcacttccatggtttcaactgcactgccttcttct |
38806690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 39871364 - 39871275
Alignment:
| Q |
37 |
gaggatgtaatgcagttttttataccctaccataacgaaatggaaagaaagatcttcgacccctgttactactgctattacaatcttcat |
126 |
Q |
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| T |
39871364 |
gaggaagtaatgcggttttttataccctacaataacgaaatggaaagaaagatcttcgacccttgttactactgctattacaatcttcat |
39871275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 3026588 - 3026528
Alignment:
| Q |
289 |
catcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcac |
349 |
Q |
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| T |
3026588 |
catcaatacactcatcacccatcatggaaccacggtggcacttccatggtttcaactgcac |
3026528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 39871218 - 39871157
Alignment:
| Q |
288 |
acatcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcac |
349 |
Q |
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| T |
39871218 |
acatcaatacactcatcacccattatggaaccacgatggcactttcatggtttcaactgcac |
39871157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 39871268 - 39871215
Alignment:
| Q |
154 |
aatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacat |
207 |
Q |
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| T |
39871268 |
aatcctcattttgattcctattattatgttggatgatgtcttgaacatccacat |
39871215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 35382309 - 35382225
Alignment:
| Q |
18 |
attattaaacactgttctt--gaggatgtaatgcagttttttataccctaccataacgaaatggaaagaaagatcttcgacccct |
100 |
Q |
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| T |
35382309 |
attattaaacactattctcaagaggaagtaatgcagttttttataccctataataacgaaatggaaagaaagatcttcgacccct |
35382225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 35382149 - 35382088
Alignment:
| Q |
288 |
acatcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcac |
349 |
Q |
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|||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
35382149 |
acatcaatacactcatcacccattatggaaccacggtggcacttccatggtttcaactgcac |
35382088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 35382199 - 35382146
Alignment:
| Q |
154 |
aatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacat |
207 |
Q |
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| T |
35382199 |
aatcctcattttgattcctattattatgttggatgatgtcttgaacatccacat |
35382146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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