View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_low_10 (Length: 361)

Name: NF10178_low_10
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_low_10
NF10178_low_10
[»] chr7 (4 HSPs)
chr7 (1-345)||(7237686-7238027)
chr7 (49-167)||(23113833-23113951)
chr7 (89-186)||(29428946-29429043)
chr7 (215-250)||(23113974-23114009)
[»] chr8 (4 HSPs)
chr8 (1-337)||(22535834-22536160)
chr8 (1-337)||(25993755-25994081)
chr8 (1-333)||(22531153-22531475)
chr8 (139-188)||(36549387-36549436)
[»] chr5 (3 HSPs)
chr5 (1-337)||(13191580-13191906)
chr5 (152-186)||(16597673-16597707)
chr5 (110-170)||(4943585-4943645)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-337)||(21286-21612)
[»] chr2 (2 HSPs)
chr2 (1-337)||(20717449-20717775)
chr2 (110-186)||(28219076-28219152)
[»] chr6 (3 HSPs)
chr6 (1-337)||(33091088-33091415)
chr6 (89-186)||(19694555-19694652)
chr6 (85-186)||(10871257-10871358)
[»] chr3 (7 HSPs)
chr3 (1-337)||(49368228-49368558)
chr3 (1-337)||(20983192-20983507)
chr3 (97-187)||(14567889-14567979)
chr3 (99-161)||(17575791-17575853)
chr3 (147-187)||(35231809-35231849)
chr3 (110-186)||(42029280-42029356)
chr3 (133-186)||(40024845-40024898)
[»] chr1 (4 HSPs)
chr1 (1-330)||(30190674-30190983)
chr1 (1-308)||(31991514-31991816)
chr1 (89-170)||(19337655-19337736)
chr1 (147-186)||(35306754-35306793)
[»] scaffold0402 (1 HSPs)
scaffold0402 (89-170)||(717-798)
[»] scaffold0039 (1 HSPs)
scaffold0039 (110-186)||(56974-57050)
[»] chr4 (2 HSPs)
chr4 (145-186)||(48084775-48084816)
chr4 (110-186)||(41809887-41809963)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 7238027 - 7237686
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  7238027 tgtttggattgatgggttgtagtggaatggaatggaatggaatgtgatggtatataataaaatttcattgtttggattgatgggatgtaaatggaacgga 7237928  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  7237927 atggaacacaatggaatcaattccattctatatcactcaatccttcaatttctcattcccccaaatttgggaggtatccaatggaataaaacttgtgtct 7237828  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7237827 ttaaattttac----tattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttttactgactgctca 7237732  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttccttcttct 345  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  7237731 tttcactttcatcttctctgtactgttgactgctcttccttcttct 7237686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 23113833 - 23113951
Alignment:
Q  49 ggtatataataaaattccattgttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaat 148  Q
    |||||||||| ||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||| ||||||    
T  23113833 ggtatataattaaattcgttgtttggattgatgggatgtaaatggaatggaatggaacacaatggaaccaattccattcaataccactcaatctttcaat 23113932  T
Q  149 ttctcattccccccaattt 167  Q
    |||||||| ||||||||||    
T  23113933 ttctcatttcccccaattt 23113951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 29428946 - 29429043
Alignment:
Q  89 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    ||||||| |||||| ||||  |||||||| ||||||||| ||| |||||  || | |||||| |||||||| ||||||||||  ||||||||||||||    
T  29428946 aatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaat 29429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 23113974 - 23114009
Alignment:
Q  215 tattctaccctcattttatttgcctcttcctctact 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  23113974 tattctaccctcattttatttgcctcttcctctact 23114009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 22536160 - 22535834
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  22536160 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 22536066  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  22536065 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 22535966  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  22535965 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 22535872  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttc 337  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  22535871 tttcactttcatcttctttgtactgctgactgctcttc 22535834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 25994081 - 25993755
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  25994081 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 25993987  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  25993986 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 25993887  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  25993886 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 25993793  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttc 337  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  25993792 tttcactttcatcttctttgtactgctgactgctcttc 25993755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 22531475 - 22531153
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  22531475 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 22531381  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  22531380 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 22531281  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||  ||    
T  22531280 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttaaacacgttcttttctctatttctactgactg--ca 22531187  T
Q  300 tttcactttcatcttctatgtactgttgactgct 333  Q
    ||||||||||||||||| ||||||| ||||||||    
T  22531186 tttcactttcatcttctttgtactgctgactgct 22531153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 36549436 - 36549387
Alignment:
Q  139 atccttcaatttctcattccccccaatttgggaggtatgcaatggaataa 188  Q
    ||||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  36549436 atccttcaatttctctttccccccaattcagggtgtatgcaatggaataa 36549387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 13191906 - 13191580
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  13191906 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 13191812  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  13191811 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 13191712  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  13191711 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 13191618  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttc 337  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  13191617 tttcactttcatcttctttgtactgctgactgctcttc 13191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 16597707 - 16597673
Alignment:
Q  152 tcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||||||||||||| ||||||||||||||||||    
T  16597707 tcattccccccaatttaggaggtatgcaatggaat 16597673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 4943585 - 4943645
Alignment:
Q  110 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 170  Q
    |||||| | ||||||||| ||| |||||| |||||||||||  |||||| |||||||||||    
T  4943585 atggaacccattccatccaataccactcattccttcaattttccattccacccaatttggg 4943645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21612 - 21286
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  21612 tgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 21518  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  21517 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 21418  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  21417 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 21324  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttc 337  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  21323 tttcactttcatcttctttgtactgctgactgctcttc 21286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 20717775 - 20717449
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  20717775 tgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 20717681  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  20717680 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 20717581  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  20717580 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 20717487  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttc 337  Q
    ||||||||||||||||| ||||||  ||||||||||||    
T  20717486 tttcactttcatcttctttgtactactgactgctcttc 20717449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 28219076 - 28219152
Alignment:
Q  110 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  28219076 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 28219152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 33091088 - 33091415
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatggg-atgtaaatggaacgg 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||| |||||  ||||| ||    
T  33091088 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatggggatgtacgtggaatgg 33091182  T
Q  99 aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtc 198  Q
    |||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  33091183 aatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtc 33091282  T
Q  199 tttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctc 298  Q
    || |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  |    
T  33091283 ttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--c 33091376  T
Q  299 atttcactttcatcttctatgtactgttgactgctcttc 337  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33091377 atttcactttcatcttctttgtactgctgactgctcttc 33091415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 19694652 - 19694555
Alignment:
Q  89 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||  ||   |||||||| |||| |||||||||||||||||||  | ||||||||||||    
T  19694652 aatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatttggggtgcatgcaatggaat 19694555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 10871257 - 10871358
Alignment:
Q  85 tgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatgga 184  Q
    ||||| ||||| | ||||||||| ||||||| | ||| ||||| ||| |||||| || | ||| || ||||||||| |||||||||| ||||||||||||    
T  10871257 tgtaattggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatgga 10871356  T
Q  185 at 186  Q
    ||    
T  10871357 at 10871358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 49368558 - 49368228
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgg----gatgtaaatggaa 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||    |||||| ||||||    
T  49368558 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatggaatggatgtacatggaa 49368464  T
Q  96 cggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgt 195  Q
     |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||    
T  49368463 tggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattctccccaatttgggaggtatccaatggaatgaaatttgt 49368364  T
Q  196 gtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactg 295  Q
    ||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  49368363 gtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg 49368268  T
Q  296 ctcatttcactttcatcttctatgtactgttgactgctcttc 337  Q
      ||||||||||||||||||| ||||||| ||||||||||||    
T  49368267 --catttcactttcatcttctttgtactgctgactgctcttc 49368228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 20983192 - 20983507
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| ||||||||||||||           ||    
T  20983192 tgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatg-----------ga 20983275  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    ||||||  ||||| || ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| ||||||||    
T  20983276 atggaatgcaatgaaaccaattccattctataccactcaatccttcaatttcttattccccccaatttgggaggtatccaatgaaatgaaatttgtgtct 20983375  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  20983376 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 20983469  T
Q  300 tttcactttcatcttctatgtactgttgactgctcttc 337  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  20983470 tttcactttcatcttctttgtactgctgactgctcttc 20983507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 14567889 - 14567979
Alignment:
Q  97 ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaata 187  Q
    ||||||||| |||||||||   ||||||||| ||| ||  ||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  14567889 ggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaata 14567979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 17575791 - 17575853
Alignment:
Q  99 aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccc 161  Q
    ||||||||| ||||||||  ||||||||  |||||||||||||||||||||| ||||||||||    
T  17575791 aatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccccc 17575853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 35231849 - 35231809
Alignment:
Q  147 atttctcattccccccaatttgggaggtatgcaatggaata 187  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35231849 atttttcattccccccaatttgggaggtatgcaatggaata 35231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 42029356 - 42029280
Alignment:
Q  110 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  42029356 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 42029280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 40024898 - 40024845
Alignment:
Q  133 cactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  40024898 cactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaat 40024845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 30190983 - 30190674
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  30190983 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 30190889  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    |||||||          ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  30190888 atggaac----------caattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 30190799  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctca 299  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||  ||    
T  30190798 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--ca 30190705  T
Q  300 tttcactttcatcttctatgtactgttgact 330  Q
    ||||||||||||||||| ||||||| |||||    
T  30190704 tttcactttcatcttctttgtactgctgact 30190674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 31991816 - 31991514
Alignment:
Q  1 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 99  Q
    ||||| |||||||||||||||||||||||||||||||||  |||| ||  ||||     ||||||||||||| ||||||||| ||||||||||||| |||    
T  31991816 tgtttggattgatgggttgtagtggaatggaatggaatgtaatgtcattttata-----aaattccattgtttggattgatgagatgtaaatggaatgga 31991722  T
Q  100 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 199  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  |||||||||||    
T  31991721 atggaacacaatggaatcaattccattctataccactcattccttcaattcctcattccccccaatttggg-ggtatccaatggaatggaacttgtgtct 31991623  T
Q  200 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctcta----tttctactgactg 295  Q
    | |||| ||||    |||||||||||||||||||||| |||||||||||||  |  ||||||| | |||||| |||||||| |    || ||||||||||    
T  31991622 tgaaatattac----tattctaccctcattttatttgtctcttcctctactcaaatataatttcccacacgtccttttctccattacttcctactgactg 31991527  T
Q  296 ctcatttcacttt 308  Q
    ||||| |||||||    
T  31991526 ctcatctcacttt 31991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 19337655 - 19337736
Alignment:
Q  89 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 170  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  19337655 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 19337736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 35306793 - 35306754
Alignment:
Q  147 atttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35306793 atttttcattccccccaatttgggaggtatgcaatggaat 35306754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 717 - 798
Alignment:
Q  89 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 170  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  717 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 56974 - 57050
Alignment:
Q  110 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||| ||||||||||| ||| |||||| |   ||| ||| ||||||||||||| ||||||||||| |||||||||    
T  56974 atggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaat 57050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 48084775 - 48084816
Alignment:
Q  145 caatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||| ||||||||||||||||||||||||| | |||||||    
T  48084775 caatttttcattccccccaatttgggaggtatacgatggaat 48084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 41809963 - 41809887
Alignment:
Q  110 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 186  Q
    |||||| | |||||||  |||| |||||| || | ||||||  ||||||||||||||||||| |||| |||||||||    
T  41809963 atggaacccattccatgatataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaat 41809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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