View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_11 (Length: 357)
Name: NF10178_low_11
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 47884891 - 47885224
Alignment:
| Q |
13 |
atcaccaatgaagagttacccttatcaacaacgaatgtctgacaaattaccttttcaaaggtaacaatttccacattgtacaaaccactgaatcccctga |
112 |
Q |
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| T |
47884891 |
atcaccaatgaagagttacccttatcaacaacgaatgtctgacaaattaccttttcaaaggtaacaatttccacattgtacaaaccactgaatcccctga |
47884990 |
T |
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| Q |
113 |
agttgaattccccttgctcatcaagatgaccatgagtgtgagataaccactcttctttaagatcaatgaatcttctcccagcttcattgatttcaccttc |
212 |
Q |
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| T |
47884991 |
agttgaattccccttgctcatcaagatgaccatgagtgtgagataaccactcttctttaagatcaatgaatcttctcccagcttcattgatttcaccttc |
47885090 |
T |
|
| Q |
213 |
tgcattcaccaaatgtgcattgtcgcggctcataaacaactcccaaaatccccatagcattacaccatcaacagcagggtgtgccatagcttcgcgcaac |
312 |
Q |
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| T |
47885091 |
tgcattcaccaaatgtgcattgtcgcggctcataaacaactcccaaaatccccatagcattacaccatcaacagcagggtgtgccatagcttcgcgcaac |
47885190 |
T |
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| Q |
313 |
atcacttccaaatcatcacctcgaacatattcat |
346 |
Q |
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| T |
47885191 |
atcacttccaaatcatcacctcgaacatattcat |
47885224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 346
Target Start/End: Complemental strand, 4624108 - 4623865
Alignment:
| Q |
103 |
aatcccctgaagttgaattccccttgctcatcaagatgaccatgagtgtgagataaccactcttctttaagatcaatgaatcttctcccagcttcattga |
202 |
Q |
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| T |
4624108 |
aatcctctaaagttgaattgaccttgttcattaacatgaccatgactatgagatagccactcttgtttcaaagctagaaacctttttccagcttcattaa |
4624009 |
T |
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| Q |
203 |
tttcaccttctgcattcaccaaatgtgcattgtcgcggctcataaacaactcccaaaatccccatagcattacaccatcaacagcagggtgtgccatagc |
302 |
Q |
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| T |
4624008 |
tatcaccttctgcattcaccaaatgtgcattatccctactcataaacaactcccagaatccccacaacattatcccttcaacagcagggtgagccatggc |
4623909 |
T |
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| Q |
303 |
ttcgcgcaacatcacttccaaatcatcacctcgaacatattcat |
346 |
Q |
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||| | | ||| ||||| | ||||||||||| |||||||||| |
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| T |
4623908 |
ttccctaagcataacttcaagatcatcacctctcacatattcat |
4623865 |
T |
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