View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_13 (Length: 323)
Name: NF10178_low_13
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 33735891 - 33736197
Alignment:
| Q |
1 |
atacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatgg |
100 |
Q |
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| T |
33735891 |
atacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatgg |
33735990 |
T |
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| Q |
101 |
attttgatagagattcttctgactcaagaacacggaacacttttagttcttgaattcaataacaagtgaagagnnnnnnnnagctagtgtgtttaattag |
200 |
Q |
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| T |
33735991 |
attttgatagagattcttctgactcaagaacatggaacacttttagttcttgaattcaataacaagtcaagagttttttttagctagtgtgtttaattag |
33736090 |
T |
|
| Q |
201 |
ttattcactaatgtgcataatctttcttccactagctgccttatcacctatgaagtgataattcatggtttagttttgataacttgtttgtcacacaagg |
300 |
Q |
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| T |
33736091 |
ttattcattaatgtgcataatctttcttccactagctgccttatcacctatgaagtgataattcatggtttagttttgataacttgtttgtcacacaagg |
33736190 |
T |
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| Q |
301 |
tagttag |
307 |
Q |
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||||||| |
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| T |
33736191 |
tagttag |
33736197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 33750706 - 33750847
Alignment:
| Q |
4 |
caaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatggatt |
103 |
Q |
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| T |
33750706 |
caaagtgagacaaatattggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggatt |
33750805 |
T |
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| Q |
104 |
ttgatagagattcttctgactcaagaacacggaacactttta |
145 |
Q |
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| T |
33750806 |
ttggtggagattcttctgattccagaactgggaacactttta |
33750847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 33721222 - 33721327
Alignment:
| Q |
4 |
caaattgagacaactatgggatttgagagtaataagaat---tgtgatttttgggatagtatcgg---agaagctgattttcaacaactaatgaggttta |
97 |
Q |
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| T |
33721222 |
caaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttatgaggttta |
33721321 |
T |
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| Q |
98 |
tggatt |
103 |
Q |
| |
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|||||| |
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| T |
33721322 |
tggatt |
33721327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 33719224 - 33719341
Alignment:
| Q |
4 |
caaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatggatt |
103 |
Q |
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|||||||| |||| | ||| ||||||| ||||||| |||||||||||| |||||| || || ||| |||||||||||||| | |||| ||||||||| | |
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| T |
33719224 |
caaattgaaacaatgacggggtttgagaataataaggattgtgattttttggatagcattggtgaacctgattttcaacaatttatgaagtttatggaat |
33719323 |
T |
|
| Q |
104 |
ttgatagagattcttctg |
121 |
Q |
| |
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|| | |||||||||||| |
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| T |
33719324 |
tttctggagattcttctg |
33719341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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