View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_14 (Length: 308)
Name: NF10178_low_14
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 23177643 - 23177933
Alignment:
| Q |
16 |
ttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacataggacacacttggtcattgagatcatggaagagtacagacga |
115 |
Q |
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| T |
23177643 |
ttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacacaggacacacttggtcattgagatcatggaagagtacagacga |
23177742 |
T |
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| Q |
116 |
cccctcttcaggaccatatacccttcaatatgattctcgctctgcgaatctgtctgttagtaaaggttcaaatgttttgtggattgacggtagttccaat |
215 |
Q |
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| T |
23177743 |
cccctcttcaggaccatatacccttcaatatgattctcgctctgcgaatctgtctgttagtaaaggttcaaatgttttgtggattgacggtaattccaat |
23177842 |
T |
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| Q |
216 |
ttttcttttcatgatgttttgaaccgagcggagttcaaacagagctacggcttgaacaactatactactattccaattgatagcaattctc |
306 |
Q |
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| T |
23177843 |
ttttcttttcatgatgttttgaaccgagcggagttcaaacagagctacggcttgaacaactatactactattccaattgatagcacttctc |
23177933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 23186772 - 23186956
Alignment:
| Q |
16 |
ttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgacataggacacacttggtcattgagatcatggaagagtacagacga |
115 |
Q |
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| T |
23186772 |
ttgataaccccaccgatacccttttacctggaatgaccttaggacacgatacttacacaggacgtacttggtcattgagatcatggaagcgtacagacga |
23186871 |
T |
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| Q |
116 |
cccctcttcaggaccatatacccttcaatatgattctcgctctgcgaatctgtctgttagtaaaggttcaaatgttttgtggatt |
200 |
Q |
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| T |
23186872 |
cccctccacgggaccatttactctgcgctatgattctggctttgggtatctatctgatagtaatggttcaaatgttgtatggatt |
23186956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 21182315 - 21182232
Alignment:
| Q |
19 |
atcaccccacagatacccttttgcctggaatgaacataggctacgatactgacataggacacacttggtcattgagatcatgga |
102 |
Q |
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|||||||||| ||||||||||| |||||||||||||| || |||||| | ||| ||| |||||| ||| ||||||||||||| |
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| T |
21182315 |
atcaccccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatgga |
21182232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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