View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10178_low_16 (Length: 301)
Name: NF10178_low_16
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 10724385 - 10724090
Alignment:
| Q |
1 |
gcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataac--cccgataatgttggttttgccgattttgcaacttcattatt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10724385 |
gcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataacaccccgataatgttggttttgccgattttgcaacttcattatt |
10724286 |
T |
|
| Q |
99 |
tgcaactt------cattagttgataaaactgatggtggcaaattgtacaagaaaaaggaccaaattgtgcttatttcatttgaaagtttgaacattttc |
192 |
Q |
| |
|
|||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10724285 |
tgcatcctttccatctttagttgataaaactgatggtggcaaattgtacaagaaaaaggaccaaattgtgcttatttcatttgaaagtttgaacattttc |
10724186 |
T |
|
| Q |
193 |
ccaaatgtagataatctttctcaatcccttgtcaaggcaatagaagaattactatactacagaaggcacaaaatgaaagtaatacaactattttgt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10724185 |
ccaaatgtagataatctttctcaatcccttgtcaaggcaatagaagaattactatactacagaaggcacaaaatgaaagtaatacaactattttgt |
10724090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 11418226 - 11418163
Alignment:
| Q |
154 |
caaattgtgcttatttc-atttgaaagtttgaacattttcccaaatgtagataatctttctcaa |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||| |||| |
|
|
| T |
11418226 |
caaattgtgcttatttctatttgaaagtttgaacatttttctaaatgtaaataatctttgtcaa |
11418163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University