View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_low_20 (Length: 268)

Name: NF10178_low_20
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_low_20
NF10178_low_20
[»] chr6 (4 HSPs)
chr6 (165-261)||(11555795-11555891)
chr6 (1-81)||(11530461-11530541)
chr6 (1-81)||(11555958-11556038)
chr6 (197-261)||(11530149-11530213)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 11555891 - 11555795
Alignment:
Q  165 caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcttctct 261  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11555891 caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctct 11555795  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11530541 - 11530461
Alignment:
Q  1 ggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11530541 ggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga 11530461  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11556038 - 11555958
Alignment:
Q  1 ggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11556038 ggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga 11555958  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 11530213 - 11530149
Alignment:
Q  197 ttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcttctct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11530213 ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctct 11530149  T

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