View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_22 (Length: 254)
Name: NF10178_low_22
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 47107123 - 47106881
Alignment:
| Q |
1 |
atttttgtgtaatttgatttggagtaatggttcataactaatata--actacaaatcacgtacggtctcataatgcatgcatatacttttcaacacagcc |
98 |
Q |
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| T |
47107123 |
atttttgtgtaatttgatttggagtaaaggttcataactaatatataactacaaatcacgtacggtct--taatgcatgcatatacttttcaacacagcc |
47107026 |
T |
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| Q |
99 |
acacaatttccgcataagtcaattcgaatcatgaagatgatgtcattgatcagcggaaccctcggggggactaatacgatattattggattgttttccgc |
198 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47107025 |
acacattttccgcataagtcaattcgaatcatgaagatgatgtcattgatcagcggaaccctcgggggggctaatacgatattattggattgttttccgc |
47106926 |
T |
|
| Q |
199 |
atgttgctggcagtggaacacaccacaccacaatttcatctctcc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47106925 |
atgttgctggcagtggaacacaccacaccacaatttcatctctcc |
47106881 |
T |
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