View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_low_27 (Length: 239)

Name: NF10178_low_27
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_low_27
NF10178_low_27
[»] chr3 (2 HSPs)
chr3 (1-223)||(52837691-52837913)
chr3 (118-204)||(37444372-37444458)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52837691 - 52837913
Alignment:
Q  1 cgccacaacaaggagaaggtttccaaatgctactataatcctctaaatcatcttcagcacggtaaaatttgtcaccttggctcaaatggtcccttaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52837691 cgccacaacaaggagaaggtttccaaatgctactataatcctctaaatcatcttcagcacggtaaaatttgtcaccttggctcaaatggtcccttaatgg 52837790  T
Q  101 ccgaacaatagatactggatgctgcaccgttgatgaggatggaattaatgttaatggcatggatatcacaaccatttgtattgttgctatcatcacaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52837791 ccgaacaatagatactggatgctgcaccgttgatgaggatggaattaatgttaatggcatggatatcacaaccattagtattgttgctatcatcacaatc 52837890  T
Q  201 accataatctttgaactgatttt 223  Q
    |||||||||||||||||||||||    
T  52837891 accataatctttgaactgatttt 52837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 37444458 - 37444372
Alignment:
Q  118 gatgctgcaccgttgatgaggatggaattaatgttaatggcatggatatcacaaccatttgtattgttgctatcatcacaatcacca 204  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||| ||| |||||||| |||||| ||||||  ||||||||||||    
T  37444458 gatgttgcaccattgatgaggatggaatgaatgttaatggcatggacatctcaaccattagtattgctgctatagtcacaatcacca 37444372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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