View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_low_31 (Length: 219)

Name: NF10178_low_31
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_low_31
NF10178_low_31
[»] chr8 (5 HSPs)
chr8 (16-194)||(6989648-6989826)
chr8 (105-160)||(2457840-2457895)
chr8 (120-178)||(41866107-41866165)
chr8 (81-173)||(32201-32293)
chr8 (104-160)||(43007759-43007815)
[»] chr4 (2 HSPs)
chr4 (74-157)||(40423007-40423090)
chr4 (104-160)||(52594590-52594646)
[»] chr3 (4 HSPs)
chr3 (105-160)||(23613134-23613189)
chr3 (104-178)||(39478137-39478212)
chr3 (121-167)||(33882671-33882717)
chr3 (103-160)||(42125524-42125581)
[»] chr5 (1 HSPs)
chr5 (120-178)||(31632880-31632938)
[»] chr1 (4 HSPs)
chr1 (105-155)||(6347274-6347324)
chr1 (104-166)||(51572294-51572356)
chr1 (120-160)||(29739177-29739217)
chr1 (104-160)||(43036287-43036343)
[»] chr2 (2 HSPs)
chr2 (121-178)||(16813667-16813724)
chr2 (121-178)||(16852946-16853003)
[»] scaffold1562 (1 HSPs)
scaffold1562 (104-160)||(201-257)
[»] scaffold1158 (1 HSPs)
scaffold1158 (104-160)||(2336-2392)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 6989648 - 6989826
Alignment:
Q  16 aaggggagtaaaagaatgaaaatcattccatattttaagtatattttcgtagggtgtaataaataaatatttacgatttatgtctttctaattttgagag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |     
T  6989648 aaggggagtaaaagaatgaaaatcattccatattttaagtatatttttgtagggtgtaataaataaatatttacgatttatatctttttaattttgaaaa 6989747  T
Q  116 tataataacaacatagattagatttggagaatttatttaaaccctttaaaactctccttcaatggattggaattcaatg 194  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6989748 tataataacaacatagactagatttggagaatttatttaaaccctttaaaactctccttcaatggattggaattcaatg 6989826  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 2457840 - 2457895
Alignment:
Q  105 aattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    |||||||||||||| ||||||||||||||| |||||| | ||||||||||| ||||    
T  2457840 aattttgagagtattataacaacatagattggatttgaataatttatttaagccct 2457895  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 41866107 - 41866165
Alignment:
Q  120 ataacaacatagattagatttggagaatttatttaaaccctttaaaactctccttcaat 178  Q
    |||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||||| ||||    
T  41866107 ataacaacatagattaaatttgaagaatttatataaacccttcaaaaccctcctccaat 41866165  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 32293 - 32201
Alignment:
Q  81 aatatttacgatttatgtctttctaattttgagagtataataacaacatagattagatttggagaatttatttaaaccctttaaaactctcct 173  Q
    |||||||| |||| || | ||| ||||||| ||| ||| ||||||||||| |||| ||||| |||||| || |||||| |  |||||||||||    
T  32293 aatatttatgattaatatatttttaattttaagaatattataacaacataaattacatttgaagaattcatataaaccgtcaaaaactctcct 32201  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 43007815 - 43007759
Alignment:
Q  104 taattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    ||||||||||| ||| |||||||||||||||| ||||| | |||| || ||||||||    
T  43007815 taattttgagaatattataacaacatagattaaatttgaaaaattcatataaaccct 43007759  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 40423007 - 40423090
Alignment:
Q  74 ataaataaatatttacgatttatgtctttctaattttgagagtataataacaacatagattagatttggagaatttatttaaac 157  Q
    |||||| |||||||| |||| || | ||| ||||||| ||| ||| |||||||||||||||| ||||| |||||| || |||||    
T  40423007 ataaattaatatttatgattaatatatttttaattttaagaatattataacaacatagattaaatttgaagaattcatataaac 40423090  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 52594590 - 52594646
Alignment:
Q  104 taattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    ||||||| ||| ||| |||||||||||||||||||||| | |||| || ||||||||    
T  52594590 taattttaagaatattataacaacatagattagatttgaaaaattcatataaaccct 52594646  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 23613134 - 23613189
Alignment:
Q  105 aattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    |||||||||||||| |||| |||||||||| |||||| | ||||||| ||||||||    
T  23613134 aattttgagagtattataataacatagattggatttgaataatttatctaaaccct 23613189  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 39478212 - 39478137
Alignment:
Q  104 taattttgagagtataataacaa-catagattagatttggagaatttatttaaaccctttaaaactctccttcaat 178  Q
    ||||||| ||| ||| ||||||| |||||||||| |||| ||||||||| ||||||||  ||||| ||||||||||    
T  39478212 taattttaagaatattataacaaacatagattaggtttgaagaatttatctaaaccctccaaaaccctccttcaat 39478137  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 33882671 - 33882717
Alignment:
Q  121 taacaacatagattagatttggagaatttatttaaaccctttaaaac 167  Q
    |||||| ||||||| ||||||||||||||||||||| ||| ||||||    
T  33882671 taacaagatagattggatttggagaatttatttaaatcctctaaaac 33882717  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 42125524 - 42125581
Alignment:
Q  103 ctaattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    |||||||| ||||||| ||| ||||||||||| |||| | ||||||||| ||||||||    
T  42125524 ctaattttaagagtattatagcaacatagattggattcgaagaatttatataaaccct 42125581  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 31632938 - 31632880
Alignment:
Q  120 ataacaacatagattagatttggagaatttatttaaaccctttaaaactctccttcaat 178  Q
    ||||||||||||||| |||||| ||||||||||||| ||||  |||||  |||||||||    
T  31632938 ataacaacatagattggatttgaagaatttatttaagccctccaaaaccttccttcaat 31632880  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 6347274 - 6347324
Alignment:
Q  105 aattttgagagtataataacaacatagattagatttggagaatttatttaa 155  Q
    |||||||| ||| | |||||||||||||||||||||  |||||||||||||    
T  6347274 aattttgaaagttttataacaacatagattagatttaaagaatttatttaa 6347324  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 51572356 - 51572294
Alignment:
Q  104 taattttgagagtataataacaacatagattagatttggagaatttatttaaaccctttaaaa 166  Q
    ||||||||||||||| ||| |||||||||||| ||||  ||||||||| ||||| ||| ||||    
T  51572356 taattttgagagtattatagcaacatagattaaatttaaagaatttatctaaactcttcaaaa 51572294  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 29739177 - 29739217
Alignment:
Q  120 ataacaacatagattagatttggagaatttatttaaaccct 160  Q
    ||||||||||| |||||||||| ||||||||| ||||||||    
T  29739177 ataacaacatatattagatttgaagaatttatctaaaccct 29739217  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 43036287 - 43036343
Alignment:
Q  104 taattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    ||||||| ||| ||| |||||||||||||||| ||||| |||||| || ||||||||    
T  43036287 taattttaagaatattataacaacatagattaaatttgaagaattcatataaaccct 43036343  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 16813724 - 16813667
Alignment:
Q  121 taacaacatagattagatttggagaatttatttaaaccctttaaaactctccttcaat 178  Q
    ||||||||||||||| ||||  ||||||||| ||||||||  ||||||||||| ||||    
T  16813724 taacaacatagattaaatttaaagaatttatataaaccctccaaaactctcctccaat 16813667  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 16853003 - 16852946
Alignment:
Q  121 taacaacatagattagatttggagaatttatttaaaccctttaaaactctccttcaat 178  Q
    ||||||||||||||| ||||  ||||||||| ||||||||  ||||||||||| ||||    
T  16853003 taacaacatagattaaatttaaagaatttatataaaccctccaaaactctcctccaat 16852946  T

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Target: scaffold1562 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 257 - 201
Alignment:
Q  104 taattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    ||||||| ||| ||| ||||||||||||||| |||||| | ||||||| ||||||||    
T  257 taattttaagaatattataacaacatagattggatttgaaaaatttatataaaccct 201  T

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Target: scaffold1158 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 2336 - 2392
Alignment:
Q  104 taattttgagagtataataacaacatagattagatttggagaatttatttaaaccct 160  Q
    ||||||| ||| ||| ||||||||||||||| |||||| | ||||||| ||||||||    
T  2336 taattttaagaatattataacaacatagattggatttgaaaaatttatataaaccct 2392  T

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