View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_4 (Length: 432)
Name: NF10178_low_4
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 23553860 - 23553465
Alignment:
| Q |
19 |
cacagaacctaaaacttaacgaacaaaacctacataaaactcacagttcagagaaaaggacatgaacaacttcgagcttgtggcgcttggagttacaaat |
118 |
Q |
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| T |
23553860 |
cacagaacctaaaacttaatgaacaaaacctacataaaactcacagttcagagaa--ggacatgaacaacttcgagcttgtggcgcttggagttacaaat |
23553763 |
T |
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| Q |
119 |
tggcatatgaaaccacaaattagtatgcgtcgtgtgtgtttacaactccgattaaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagag |
218 |
Q |
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| T |
23553762 |
tggcatatgaaaccacaaattagaatgcgtcgtgtgtgtttacaacaccgatttaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagag |
23553663 |
T |
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| Q |
219 |
tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggtcgatggccat |
318 |
Q |
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| T |
23553662 |
tttgtcgtggttgaaatctccgtgtgcggtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggccgatggccat |
23553563 |
T |
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| Q |
319 |
gccatttgaaagatcattttagtttgaagagttatgcatcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagctatataac |
416 |
Q |
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| T |
23553562 |
gccatttgaaaaagcattttagtttgaagagttatgcatcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagctatataac |
23553465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 23306435 - 23306392
Alignment:
| Q |
21 |
cagaacctaaaacttaacgaacaaaacctacataaaactcacag |
64 |
Q |
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| T |
23306435 |
cagaacctaaaacttaaccaacaaagcctacatcaaactcacag |
23306392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 23306321 - 23306235
Alignment:
| Q |
181 |
atcagcgtgcagcgtgtgcgatggttaagatttcagag--tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtg |
266 |
Q |
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| T |
23306321 |
atcagtgtgcagcgtgttcgatggctaagatttcagagtatgtgtggtggttgaaattgacgtgtg-ggtggttaaaattcatgtgtg |
23306235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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