View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_5 (Length: 429)
Name: NF10178_low_5
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 214 - 413
Target Start/End: Complemental strand, 37774545 - 37774346
Alignment:
| Q |
214 |
tatagagattaaaagtacttttaacaaacaaaactcttaaatctaaccggaaaactaaatatttctacatatagctgatgatcaagaataatgaaagatc |
313 |
Q |
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| T |
37774545 |
tatagagattaaaagtacttttaacaaacaaaactcttaaatctaaccggaaaactaaatatttctacatatagttgatgatcaagaataatgaaagatc |
37774446 |
T |
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| Q |
314 |
ctctatcttaaattcaattcgtcctcatagaaaaattattgttggtgttcgtccatttcaattttaagtggtctttgaaatgaccaattaatcacatatt |
413 |
Q |
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| T |
37774445 |
ctctatcttaaattcaattcgtcctcatcggaaaattattgttggtgtttgtccatttcgattttaagtggtctttgaaatgaccaattaatcacatatt |
37774346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 37774867 - 37774692
Alignment:
| Q |
1 |
actgaaagaacgtagaaatggtgaaaataatgttgacattttcaaaagttatgaaaatgttatatatacttttaatattgtaagagaaaatggtgaagat |
100 |
Q |
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| T |
37774867 |
actgaaagaacgtagaaatggtgaaaataatgttgacattttcaaaagttatgaaaatgttatatatacttttaaaattgtacgagaaaatggtgaagat |
37774768 |
T |
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| Q |
101 |
atattgaatctaccctctcttattttaggaaaatagttggcgtgaaaatgaaaacatgacaattttttaattaaaacgatt |
181 |
Q |
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| T |
37774767 |
atattgaatctaccctctcttatttt-----aatagttgccgtgaaaatgaaaacatgacaattttttaattaaaacgatt |
37774692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 3410924 - 3410980
Alignment:
| Q |
346 |
aaattattgttggtgttcgtccatttcaattttaagtggtctttgaaatgaccaatt |
402 |
Q |
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| T |
3410924 |
aaattgttgttggtgttcgcccattttgattataaatggtctttgaaatgaccaatt |
3410980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 9645701 - 9645757
Alignment:
| Q |
344 |
aaaaattattgttggtgttcgtccatttcaattttaagtggtctttgaaatgaccaa |
400 |
Q |
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||||||| |||| | |||| ||||||||| ||| || |||||||||||||||||||| |
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| T |
9645701 |
aaaaattgttgtagatgtttgtccatttcgattataggtggtctttgaaatgaccaa |
9645757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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