View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_low_8 (Length: 372)
Name: NF10178_low_8
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 19325831 - 19326173
Alignment:
| Q |
14 |
atatatatatctaagctataagaataatagcatgataatgtagatcagatgaggcaatacatcctcctctctctgaaaaagaccaacaaattcatccctc |
113 |
Q |
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| T |
19325831 |
atatatatatctaagctataagaataatagcatgataatgtagatcagatgaggcaatacatcctcctctctctgaaaaagaccaacaaattcatccct- |
19325929 |
T |
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| Q |
114 |
taagcaattccagattgtgatttttcttcttctttaagccactgcaggcatgtccttgagccaagcatctagtggttttccaatggaataaacgataaaa |
213 |
Q |
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| T |
19325930 |
-aagcaattccagattgtgattttttttcttctttaagccactgcaggcatgtccttgagccaagcatctagtggttttccaatggaataaacgataaaa |
19326028 |
T |
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| Q |
214 |
ccgatgtctctcagctttttaacatcgacaacattccttccatcaaagataaatgcaggcttctgcatgttgtcaaaaactttttggtaatcaaggttct |
313 |
Q |
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| T |
19326029 |
ccgatgtctctcagctttttaacatcgacaacattccttccatcaaagataaatgcaggcttctgcatgttgtcaaaaactttttggtaatcaaggttct |
19326128 |
T |
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| Q |
314 |
tgaactcgtcccactcagtcaaaatgcagataccatgtgaatcct |
358 |
Q |
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| T |
19326129 |
tgaactcgtcccactcggtcaaaatgcagataccatgtgaatcct |
19326173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 146 - 341
Target Start/End: Original strand, 32270713 - 32270908
Alignment:
| Q |
146 |
tttaagccactgcaggcatgtccttgagccaagcatctagtggttttccaatggaataaacgataaaaccgatgtctctcagctttttaacatcgacaac |
245 |
Q |
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| T |
32270713 |
tttatgccactgcaggcatgtccttgagccatggatccagtggcttaccaatggaataaacaataaatccaatcttcctgagcttaccaacatccataac |
32270812 |
T |
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| Q |
246 |
attccttccatcaaagataaatgcaggcttctgcatgttgtcaaaaactttttggtaatcaaggttcttgaactcgtcccactcagtcaaaatgca |
341 |
Q |
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| T |
32270813 |
attcctaccatcaaataaaaatgctggcttctgcatattgtcataaattttttggtaatcgagtttcttaaactcgtcccactcggtcataatgca |
32270908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 3663831 - 3664037
Alignment:
| Q |
146 |
tttaagccactgcaggcatgtccttgagccaagcatctagtggttttccaatggaataaacgataaaaccgatgtctctcagctttttaacatcgacaac |
245 |
Q |
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|||| ||||| || ||||| ||||||||||| ||||| | |||||||||||| || ||||| || ||||| || || | ||||| | | |||||||||| |
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| T |
3663831 |
tttatgccacagctggcatatccttgagccatgcatccaatggttttccaattgagtaaacaatgaaaccaatctcacgtagcttctcagcatcgacaac |
3663930 |
T |
|
| Q |
246 |
attccttccatcaaagataaatgcaggcttctgcatgttgtcaaaaactttttggtaatcaaggttcttgaactcgtcccactcagtcaaaatgcagata |
345 |
Q |
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| T |
3663931 |
gttccttccatcaaaaacaaatgctggtttttgcatgttctcgtaaatcctctggtaatcaagtgtcttgaactcatcccattcagtcagaatgcagata |
3664030 |
T |
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| Q |
346 |
ccatgtg |
352 |
Q |
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||||||| |
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| T |
3664031 |
ccatgtg |
3664037 |
T |
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