View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_high_1 (Length: 563)

Name: NF10179_high_1
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_high_1
NF10179_high_1
[»] chr1 (11 HSPs)
chr1 (18-552)||(47584147-47584681)
chr1 (212-552)||(47574446-47574787)
chr1 (20-145)||(47574869-47574994)
chr1 (283-437)||(47627160-47627314)
chr1 (292-412)||(47607295-47607415)
chr1 (339-430)||(47287562-47287653)
chr1 (292-416)||(47593026-47593150)
chr1 (34-134)||(47627663-47627763)
chr1 (295-374)||(47698389-47698468)
chr1 (319-429)||(47568252-47568361)
chr1 (34-119)||(47593652-47593737)
[»] chr8 (3 HSPs)
chr8 (32-131)||(10401426-10401525)
chr8 (292-401)||(10401663-10401772)
chr8 (295-331)||(23560492-23560528)
[»] chr6 (13 HSPs)
chr6 (291-416)||(20233204-20233329)
chr6 (291-416)||(22127188-22127313)
chr6 (32-131)||(20233467-20233566)
chr6 (32-131)||(22127451-22127550)
chr6 (32-134)||(22207072-22207174)
chr6 (45-134)||(21968014-21968103)
chr6 (45-134)||(22085897-22085986)
chr6 (32-135)||(18995489-18995592)
chr6 (358-429)||(22086200-22086271)
chr6 (351-429)||(18979739-18979817)
chr6 (355-429)||(21968313-21968387)
chr6 (351-413)||(22206807-22206869)
chr6 (351-412)||(18991091-18991152)
[»] chr5 (4 HSPs)
chr5 (31-137)||(469743-469849)
chr5 (295-416)||(486948-487069)
chr5 (301-377)||(454543-454619)
chr5 (307-377)||(470074-470144)
[»] scaffold0074 (2 HSPs)
scaffold0074 (32-135)||(49867-49970)
scaffold0074 (351-413)||(49583-49645)
[»] scaffold0007 (1 HSPs)
scaffold0007 (32-135)||(7401-7504)
[»] chr3 (1 HSPs)
chr3 (301-428)||(1077295-1077422)
[»] chr4 (1 HSPs)
chr4 (297-331)||(31708271-31708305)
[»] chr2 (1 HSPs)
chr2 (295-331)||(2707324-2707360)


Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Complemental strand, 47584681 - 47584147
Alignment:
Q  18 cgaacaacctttcctctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47584681 cgaacaacctttcctctttccactaataatctctagaaccatgattccaaaactatacacatctgatttcacagaaaagtatccatgcatggcatattct 47584582  T
Q  118 ggagatatataaccactatatatgaaaaacgagaaagtttgtttagtagacatcgctcataatgattgttaggtaaaaaagacatgtatgaaggtgaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584581 ggagatatataaccactatatatgaaaaacgagaaagtttgtttagtagacatcgctcataatgattgttaggtaaaaaagacatgtatgaaggtgaata 47584482  T
Q  218 aagtaaagcaggaatcgtaagcttactatgttcctacaatcgtgcacgtgctttcttcaatttgatctatagatacaattctagccatgccaaaatctga 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584481 aagtaaagtaggaatcgtaagcttactatgttcctacaatcgtgcacgtgctttcttcaatttgatctatagatacaattctagccatgccaaaatctga 47584382  T
Q  318 tatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattcca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47584381 tatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggaggtaaagaattcca 47584282  T
Q  418 cgggcaattcctttgatgatcttctggcgttgagaccaaggtaaaagctttcgcttatggggatctacaatgttagtttctttggatggtcaatttcgag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584281 cgggcaattcctttgatgatcttctggcgttgagaccaaggtaaaagctttcgcttatggggatctacaatgttagtttctttggatggtcaatttcgag 47584182  T
Q  518 ttcaaataagaacggatccacaaaaggtaattcat 552  Q
    |||||||||||||||||||||||||||||||||||    
T  47584181 ttcaaataagaacggatccacaaaaggtaattcat 47584147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 212 - 552
Target Start/End: Complemental strand, 47574787 - 47574446
Alignment:
Q  212 tgaataaagtaaagcaggaatcgtaagcttactatgttcctacaatcgtgcacgtgctttcttcaatttgatctatagatacaattctagccatgccaaa 311  Q
    ||||| |||||||| ||||||   || |||||||||| |||||||| ||||| ||  ||||||||||||||||||  |||||||||||||||||||||||    
T  47574787 tgaatgaagtaaagtaggaattagaaacttactatgtccctacaattgtgcatgtattttcttcaatttgatctactgatacaattctagccatgccaaa 47574688  T
Q  312 atctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaaga 411  Q
    ||||||||||||||| ||||| |||| |||||| | ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  47574687 atctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcatggagataaaga 47574588  T
Q  412 attccacgggcaattcctttgatgatcttctggcgttgagaccaaggtaaaagctttcgcttatggggatctacaatgttagtttctttggatggtcaat 511  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||| ||| || |||||||| ||||| |||||||| ||||||| |||||| |||  ||    
T  47574587 attccacgggcaactcctttgatgattttctgacgttgagaccaagataatagttttcgcttctgggggtctacaatattagtttatttggaaggttgat 47574488  T
Q  512 t-tcgagttcaaataagaacggatccacaaaaggtaattcat 552  Q
    | || ||||| ||| | || ||||||| ||||||| ||||||    
T  47574487 tatccagttcgaatcataatggatccataaaaggtcattcat 47574446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 47574994 - 47574869
Alignment:
Q  20 aacaacctttcctctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctgg 119  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||| |||    
T  47574994 aacaacctttcttctttccactaataatttctagaaccatgattccgaaactatacacatcagacttcacagaaaaatatccatgcattgcatattatgg 47574895  T
Q  120 agatatataaccactatatatgaaaa 145  Q
    ||||||||| |||||| |||||||||    
T  47574894 agatatatatccactacatatgaaaa 47574869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 283 - 437
Target Start/End: Complemental strand, 47627314 - 47627160
Alignment:
Q  283 tctatagatacaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattt 382  Q
    ||||||| ||| || || |||||||||||||| || |||||||| ||||| ||  ||||||  |  |||||||| ||||||| |||||| ||||| || |    
T  47627314 tctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatct 47627215  T
Q  383 tgaggcgagaatcttcatggagataaagaattccacgggcaattcctttgatgat 437  Q
    |||| |||||||||||||| || ||||||||||| || ||||| ||||| |||||    
T  47627214 tgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat 47627160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 47607415 - 47607295
Alignment:
Q  292 acaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgag 391  Q
    |||||||||||||||||||||||||| ||||| || ||||| |    ||||||||| | ||| ||||||||||||||||||||||| | ||| || ||||    
T  47607415 acaattctagccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtcgag 47607316  T
Q  392 aatcttcatggagataaagaa 412  Q
    |||  ||||| | ||||||||    
T  47607315 aataatcatgtaaataaagaa 47607295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 47287653 - 47287562
Alignment:
Q  339 atctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacgggcaattcctt 430  Q
    ||||||||| | ||| |||| ||||||||| |||||||| ||| | || ||||||||||| || |||||||| |||||||||||||||||||    
T  47287653 atctaataatatattactagctttaagatcgcgatgtatgattctaagtcgagaatcttcgtgaagataaagcattccacgggcaattcctt 47287562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 416
Target Start/End: Complemental strand, 47593150 - 47593026
Alignment:
Q  292 acaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgag 391  Q
    ||||| |||||||| ||||||||||||||||| || ||||| ||   ||| | ||  ||||| |||||||| ||||| |||||||| | |||||| ||||    
T  47593150 acaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgag 47593051  T
Q  392 aatcttcatggagataaagaattcc 416  Q
    ||| |||||| | ||||||||||||    
T  47593050 aatattcatgcaaataaagaattcc 47593026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 47627763 - 47627663
Alignment:
Q  34 tttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataaccac 133  Q
    ||||||||||||||||| |||||||| | |||||||||| | ||||| || ||| | ||||| | ||||||||| |||||||| ||||| || |||||||    
T  47627763 tttccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatgtaaccac 47627664  T
Q  134 t 134  Q
    |    
T  47627663 t 47627663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 47698468 - 47698389
Alignment:
Q  295 attctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatg 374  Q
    ||||| |||||||| ||||| |||||||| || |||||||||  |||||| || ||||| |||||||| |||||||||||    
T  47698468 attcttgccatgccgaaatcagatattttaggattcatgttatcatctaacaatacattactaggtttgagatcacgatg 47698389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 429
Target Start/End: Complemental strand, 47568361 - 47568252
Alignment:
Q  319 atttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccac 418  Q
    |||||||| | | |||||| |||||| || ||||| ||| |||| |||||||  ||| | ||||| ||||| ||||| |||||||||||||||||||| |    
T  47568361 atttttggttccttgttaccatctaacaaaacattactatgttttagatcactgtgt-taattttaaggcgtgaatcctcatggagataaagaattcctc 47568263  T
Q  419 gggcaattcct 429  Q
    | |||||||||    
T  47568262 gagcaattcct 47568252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 47593737 - 47593652
Alignment:
Q  34 tttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctgg 119  Q
    |||||| |||||||||||| ||| ||||  ||||||||| | |||||||| ||| | ||||||| |||| |||| |||||||||||    
T  47593737 tttccagtaataatctctaaaacaatgacaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcatattctgg 47593652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 10401426 - 10401525
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    |||||||| ||||||| || | || ||||| |||||||||||| ||||| |||||| | ||||| | |||| |||| |||||||||||||||||||||||    
T  10401426 tctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 10401525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 401
Target Start/End: Original strand, 10401663 - 10401772
Alignment:
Q  292 acaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgag 391  Q
    ||||||||||| |  ||||||||||||||||||||  |||| ||   ||||||||| | ||| |||||||| || ||||| || || | |||||| ||||    
T  10401663 acaattctagcaagaccaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataactttgagtcgag 10401762  T
Q  392 aatcttcatg 401  Q
    ||| ||||||    
T  10401763 aatgttcatg 10401772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 23560492 - 23560528
Alignment:
Q  295 attctagccatgccaaaatctgatatttttgggttca 331  Q
    |||||||| |||||||||||||||||||| |||||||    
T  23560492 attctagctatgccaaaatctgatattttcgggttca 23560528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 416
Target Start/End: Complemental strand, 20233329 - 20233204
Alignment:
Q  291 tacaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcga 390  Q
    |||||||||||| |  ||||||||||||||||||||  |||||||   ||||||||| | ||| |||||||| || |||||||| || | |||||| |||    
T  20233329 tacaattctagcaagaccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtcga 20233230  T
Q  391 gaatcttcatggagataaagaattcc 416  Q
    |||| |||||| | ||| ||||||||    
T  20233229 gaatgttcatgcaaatagagaattcc 20233204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 416
Target Start/End: Complemental strand, 22127313 - 22127188
Alignment:
Q  291 tacaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcga 390  Q
    |||||||||||| |  ||||||||||||||||||||  |||||||   ||||||||| | ||| |||||||| || |||||||| || | |||||| |||    
T  22127313 tacaattctagcaagaccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtcga 22127214  T
Q  391 gaatcttcatggagataaagaattcc 416  Q
    |||| |||||| | ||| ||||||||    
T  22127213 gaatgttcatgcaaatagagaattcc 22127188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 20233566 - 20233467
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    |||||||  ||||||| |||| |||||||| |||||||||||| ||||| |||||| ||||||| |  ||  |||| |||||||||||||| ||||||||    
T  20233566 tctttccggtaataatttctaaaaccatgactccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacc 20233467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 22127550 - 22127451
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    |||||||  ||||||| |||| |||||||| |||||||||||| ||||| |||||| ||||||| |  ||  |||| |||||||||||||| ||||||||    
T  22127550 tctttccggtaataatttctaaaaccatgactccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacc 22127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 22207174 - 22207072
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    ||||||||  ||||||||||| || ||| | |||||||||||| |  || |||||  ||||||| | |||| |||| |||||||||||||| ||||||||    
T  22207174 tctttccaacaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattctggagacatataacc 22207075  T
Q  132 act 134  Q
    |||    
T  22207074 act 22207072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 21968014 - 21968103
Alignment:
Q  45 aatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataaccact 134  Q
    ||||||||| | ||||| |||||||||||| ||||| |||||  ||||||| | || |  ||| |||||||||||||| |||||||||||    
T  21968014 aatctctaggatcatgactccaaaactataaacatctgatttttcagaaaattgtcaaaacattgcatattctggagacatataaccact 21968103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 22085897 - 22085986
Alignment:
Q  45 aatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataaccact 134  Q
    ||||||||| | ||||| |||||||||||| ||||| |||||  ||||||| | ||||  ||| ||||||||||| || |||||||||||    
T  22085897 aatctctaggatcatgactccaaaactataaacatctgatttttcagaaaattgtccaaacattgcatattctggcgacatataaccact 22085986  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 18995489 - 18995592
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    ||||||||  ||||||||||| || ||| | |||||||||||| |  || |||||  ||||||| | |||| |||| |||||||| ||||| ||||||||    
T  18995489 tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataacc 18995588  T
Q  132 acta 135  Q
    ||||    
T  18995589 acta 18995592  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 22086200 - 22086271
Alignment:
Q  358 ggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacgggcaattcct 429  Q
    ||||| |||||||||||||| | |||||| ||||||| |||||| | |||||||||||| |  |||||||||    
T  22086200 ggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaataaagaattcctccagcaattcct 22086271  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 18979739 - 18979817
Alignment:
Q  351 attgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacgggcaattcct 429  Q
    |||||||||||| | ||| |||||||| | |||||| ||||||| |||||| | |||||||| ||||||  ||||||||    
T  18979739 attgctaggtttgacatcccgatgtataactttgagtcgagaatgttcatgcaaataaagaagtccacgaacaattcct 18979817  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 21968313 - 21968387
Alignment:
Q  355 ctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacgggcaattcct 429  Q
    |||||||| ||||| |||||||| | |||||| |||||||  ||||| | |||||||||||| || |||||||||    
T  21968313 ctaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaataaagaattcctcgagcaattcct 21968387  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 22206869 - 22206807
Alignment:
Q  351 attgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaat 413  Q
    |||||||||||| ||||| |||||||| | |||||| ||||||| |||||| | |||||||||    
T  22206869 attgctaggtttgagatcccgatgtataactttgagtcgagaattttcatgcaaataaagaat 22206807  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 18991091 - 18991152
Alignment:
Q  351 attgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaa 412  Q
    |||||||||||| ||||| |||||||| | |||||| ||||||| |||||| | ||||||||    
T  18991091 attgctaggtttgagatcccgatgtataactttgagtcgagaatgttcatgcaaataaagaa 18991152  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 469743 - 469849
Alignment:
Q  31 ctctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataac 130  Q
    |||||||||||||  ||||| ||||  || | |||||||||  ||||||| |||||| ||||||| | ||| ||||| |||||||| ||||| |||||||    
T  469743 ctctttccactaactatctcaagaattataactccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataac 469842  T
Q  131 cactata 137  Q
    |||||||    
T  469843 cactata 469849  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 416
Target Start/End: Original strand, 486948 - 487069
Alignment:
Q  295 attctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaat 394  Q
    ||||| ||||| ||||| ||||| || ||||||||||||| | | || ||||| ||||| || | ||| ||||| | |||||||||||  || | |||||    
T  486948 attctggccattccaaagtctgaaatctttgggttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat 487047  T
Q  395 cttcatggagataaagaattcc 416  Q
    ||||||| ||||||||||||||    
T  487048 cttcatgaagataaagaattcc 487069  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 454543 - 454619
Alignment:
Q  301 gccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtat 377  Q
    ||||| ||||| |||||||||||||| ||||| ||  ||||||| || | |||||||||||| ||||||||||||||    
T  454543 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtat 454619  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 470074 - 470144
Alignment:
Q  307 ccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtat 377  Q
    |||||||||||||||||||| ||||| ||   |||||| || |||||||||||||| ||||| ||||||||    
T  470074 ccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtat 470144  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 49970 - 49867
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    ||||||||  ||||||||||| || ||| | |||||||||||| |  || |||||  ||||||| | |||| |||| |||||||| ||||| ||||||||    
T  49970 tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataacc 49871  T
Q  132 acta 135  Q
    ||||    
T  49870 acta 49867  T

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Target: scaffold0074; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 49645 - 49583
Alignment:
Q  351 attgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggagataaagaat 413  Q
    |||||||||||| ||||| |||||||| | |||||| ||||||| |||||| | |||||||||    
T  49645 attgctaggtttgagatcccgatgtataactttgagtcgagaatattcatgcaaataaagaat 49583  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 7504 - 7401
Alignment:
Q  32 tctttccactaataatctctagaaccatgattccaaaactatacacatccgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 131  Q
    ||||||||  ||||||||||| || ||| | |||||||||||| |  || |||||  ||||||| | |||| |||| |||||||| ||||| ||||||||    
T  7504 tctttccagcaataatctctaaaagcataactccaaaactataaatgtcagatttttcagaaaattgtccaagcattgcatattccggagacatataacc 7405  T
Q  132 acta 135  Q
    ||||    
T  7404 acta 7401  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 1077422 - 1077295
Alignment:
Q  301 gccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcat 400  Q
    |||| ||||||||||||||||||||| ||||| | | | |||||||| | ||| || ||||| ||||| |||||||| ||  | |  | |||||||| ||    
T  1077422 gccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgat 1077323  T
Q  401 ggagataaagaattccacgggcaattcc 428  Q
    | |||||||  | |||||||||||||||    
T  1077322 gaagataaatcagtccacgggcaattcc 1077295  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 31708305 - 31708271
Alignment:
Q  297 tctagccatgccaaaatctgatatttttgggttca 331  Q
    ||||||||| |||||||||||||||||||||||||    
T  31708305 tctagccattccaaaatctgatatttttgggttca 31708271  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 2707324 - 2707360
Alignment:
Q  295 attctagccatgccaaaatctgatatttttgggttca 331  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  2707324 attctagccatgccaaaatcagatatttttggattca 2707360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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