View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_high_12 (Length: 331)
Name: NF10179_high_12
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 119 - 316
Target Start/End: Complemental strand, 47158629 - 47158435
Alignment:
| Q |
119 |
taaacctccatgcataaccatcgccaaccgagagagcatagtagtaattcagaggaaaagacaaaattaaacatgtgttggaaaaattgagtcgagggat |
218 |
Q |
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| T |
47158629 |
taaacctccatgcataaccatcgccaacctagagagcatagta---attcagaggaaaagacaaaattaaacatgtgttggaaaaattgagtcgagggat |
47158533 |
T |
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| Q |
219 |
gattaaagagattccatgcttgatgttattgaaagactataataatgcgcaatcactatattatagcatataaattgtaacttggcaacaaaataatt |
316 |
Q |
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| T |
47158532 |
gattaaagagattccatgcttgatgttattgaaagactataataatgcgcaatcactatattatagcatataaattgtaacttggcaacaaaataatt |
47158435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 47160158 - 47160054
Alignment:
| Q |
16 |
gagtttaggaagacaaaggaactataaaacttacaaatagaagttattcctttatttggatagagttagcttcatttctaccatacattgctttttatgt |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47160158 |
gagtttaggaagacaaaggaactatgaaacttacaaatagaagttattcctttatttggatagagttagcttcatttctaccatacattgctttttatgt |
47160059 |
T |
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| Q |
116 |
cctta |
120 |
Q |
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| T |
47160058 |
cctta |
47160054 |
T |
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