View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_high_14 (Length: 313)
Name: NF10179_high_14
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 49552759 - 49553042
Alignment:
| Q |
21 |
tattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaagcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49552759 |
tattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaagcaa |
49552858 |
T |
|
| Q |
121 |
catttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtctt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49552859 |
catttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatctcttgttcttgcagtgttatgtttttaccatgtctt |
49552958 |
T |
|
| Q |
221 |
ccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49552959 |
ccatgttgacagtaacagaagataagctttatgcattcaatgattgataatggagtaggttttcttgtcttccacgtgcctttg |
49553042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 119 - 304
Target Start/End: Original strand, 49537536 - 49537721
Alignment:
| Q |
119 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtc |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttaccatgtc |
49537635 |
T |
|
| Q |
219 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
49537636 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttg |
49537721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University