View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_high_23 (Length: 276)
Name: NF10179_high_23
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_23 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 493024 - 493298
Alignment:
| Q |
7 |
attaagattgagttataaacaatgggggattaggtagnnnnnnntacatttaggagtatataga-----taaaacaaaa-------tatagatattaaaa |
94 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||| |||||||||||||| |
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| T |
493024 |
attaagattgagttataaacaatgggggattaggtagaaaaaaatacatttaggagtagatagaataactaaaaaaaaatataaaatatagatattaaaa |
493123 |
T |
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| Q |
95 |
acaatctatctattaacattatataaagccaaactaattttattttgttgttttaatgaattaatttcaattattacacaactaaaattacacatacgct |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493124 |
acaatctatctattaacattatataaagccaaactaattttattttgttgttttaatgaattaatttcaattattacacaactaaaattacacatacgct |
493223 |
T |
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| Q |
195 |
cctttaactcaatttcaaaaattacacacatgatcatttaacttaatttcaagtaatagttcagtcttttatccctttg |
273 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
493224 |
cctttaactcaatttcaaaaattacacaca----catttaacttaatttcaagtaatagttcggtcttttatccttttg |
493298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 42264189 - 42264463
Alignment:
| Q |
7 |
attaagattgagttataaacaatgggggattaggtagnnnnnnntacatttaggagtatataga-----taaaacaaaa-------tatagatattaaaa |
94 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||| |||||||||||||| |
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| T |
42264189 |
attaagattgagttataaacaatgggggattaggtagaaaaaaatacatttaggagtagatagaataactaaaaaaaaatataaaatatagatattaaaa |
42264288 |
T |
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| Q |
95 |
acaatctatctattaacattatataaagccaaactaattttattttgttgttttaatgaattaatttcaattattacacaactaaaattacacatacgct |
194 |
Q |
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| T |
42264289 |
acaatctatctattaacattatataaagccaaactaattttattttgttgttttaatgaattaatttcaattattacacaactaaaattacacatacgct |
42264388 |
T |
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| Q |
195 |
cctttaactcaatttcaaaaattacacacatgatcatttaacttaatttcaagtaatagttcagtcttttatccctttg |
273 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
42264389 |
cctttaactcaatttcaaaaattacacaca----catttaacttaatttcaagtaatagttcggtcttttatccttttg |
42264463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 42274837 - 42274884
Alignment:
| Q |
199 |
taactcaatttcaaaaattacacacatgatcatttaacttaatttcaa |
246 |
Q |
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||||| |||||||||||||| ||| ||| ||||||||||||||||||| |
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| T |
42274837 |
taacttaatttcaaaaattaaacatatggtcatttaacttaatttcaa |
42274884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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