View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_high_24 (Length: 268)

Name: NF10179_high_24
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_high_24
NF10179_high_24
[»] chr7 (5 HSPs)
chr7 (18-258)||(31147192-31147432)
chr7 (18-258)||(31165017-31165257)
chr7 (117-256)||(31051722-31051861)
chr7 (117-258)||(31110933-31111074)
chr7 (118-256)||(31064138-31064276)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 31147432 - 31147192
Alignment:
Q  18 tatttcttttttaattaattatagatgactaatcccttaaaataaacacctagaatagatgactaaattactcaaaagataattatcctattgtttgttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31147432 tatttcttttttaattaattatagatgactaatcccttaaaataaacacctagaatagatgactaaattactcaaaagataattatcctattgtttgttt 31147333  T
Q  118 tgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31147332 tgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga 31147233  T
Q  218 caaactcaatacttctaagaaagttccatgtcacaggttct 258  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  31147232 caaactcaatacttctaagaaagttccatgtaacaggttct 31147192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 31165257 - 31165017
Alignment:
Q  18 tatttcttttttaattaattatagatgactaatcccttaaaataaacacctagaatagatgactaaattactcaaaagataattatcctattgtttgttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31165257 tatttcttttttaattaattatagatgactaatcccttaaaataaacacctagaatagatgactaaattactcaaaagataattatcctattgtttgttt 31165158  T
Q  118 tgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31165157 tgtttgtattaggtgtttggccggaatcggagagttttcacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga 31165058  T
Q  218 caaactcaatacttctaagaaagttccatgtcacaggttct 258  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  31165057 caaactcaatacttctaagaaagttccatgtaacaggttct 31165017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 117 - 256
Target Start/End: Complemental strand, 31051861 - 31051722
Alignment:
Q  117 ttgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttg 216  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||| ||||| |||||| ||     
T  31051861 ttgtttggattaggtgtttggcccgaatcggcgagttttaacgacagaggaataggtccaattccagcaaaatggcgtgggggaaacatctgtcaaatta 31051762  T
Q  217 acaaactcaatacttctaagaaagttccatgtcacaggtt 256  Q
    ||||||| |    ||| ||||||||||||||| |||||||    
T  31051761 acaaactaagaggttcaaagaaagttccatgtaacaggtt 31051722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 31111074 - 31110933
Alignment:
Q  117 ttgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttg 216  Q
    ||||||| || |||||||||||| |||||  ||||||||| |||||||||||| || |||||||||   | |||||||||||| ||||| ||||||||||    
T  31111074 ttgtttggatcaggtgtttggcccgaatctaagagttttagcgacagaggaattggcccaattccagcgaaatggcgtgggggaaacatctgtcaacttg 31110975  T
Q  217 acaaactcaatacttctaagaaagttccatgtcacaggttct 258  Q
    ||||||||||||| ||||| |||||||||||  |||||||||    
T  31110974 acaaactcaatacatctaaaaaagttccatgcaacaggttct 31110933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 31064276 - 31064138
Alignment:
Q  118 tgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga 217  Q
    |||||| |||||||||||||||||||||   |||||||| |||||||||||| || |||||||||  || |||||||||||||||  | |||||| || |    
T  31064276 tgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatgtctgtcaaattaa 31064177  T
Q  218 caaactcaatacttctaagaaagttccatgtcacaggtt 256  Q
    ||||||||    ||||||||||||||| ||| |||||||    
T  31064176 caaactcagaggttctaagaaagttccttgtaacaggtt 31064138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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