View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_high_33 (Length: 240)
Name: NF10179_high_33
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 864916 - 864705
Alignment:
| Q |
17 |
taccttgacagataaggtgggttggtttgatcgatcagtcggtaagacaatataatcagccaaaacaacaacgttattctgaatttcttcagaaacacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
864916 |
taccttgacagataaggtgggttggtttgatcgatcagtcggtaagacaatataatcagccaaaacaacaacgttattctgaatttcttcagaaacacat |
864817 |
T |
|
| Q |
117 |
ttggttcctgaaacaggtaaattgatccatatagcatgacacgttgagaacaagtacaaaaacaatactgccaaaactatgttcttctccataacacctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
864816 |
ttggttcctgaaacaggtaaattgatccatatagcatgacatgttgagaacaagtacaaaaacaatactgccaaaactatgttcttctccataacacctt |
864717 |
T |
|
| Q |
217 |
caccttcacctt |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
864716 |
caccttcacctt |
864705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 36956134 - 36956081
Alignment:
| Q |
68 |
ataatcagccaaaacaacaacgttattctgaatttcttcagaaacacatttggt |
121 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||| || || |||||||| |
|
|
| T |
36956134 |
ataatcagccaaaacgacgacgttattctggatttcttcggagacgcatttggt |
36956081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University