View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_high_34 (Length: 240)
Name: NF10179_high_34
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 41342121 - 41342015
Alignment:
| Q |
116 |
ctttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcacgatcaacctcattctcactcaaagtcctattatggcgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41342121 |
ctttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcacgatcaacctcattctcactcaaagtcctattat-gcgat |
41342023 |
T |
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| Q |
216 |
gctccttc |
223 |
Q |
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|||||||| |
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| T |
41342022 |
gctccttc |
41342015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 41342347 - 41342301
Alignment:
| Q |
4 |
aattaagcctaaatattacatgtatatgacaaaattacacttgtgac |
50 |
Q |
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| T |
41342347 |
aattaagcctagatattacatgtatatgacaaaattacacttgtgac |
41342301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 2366819 - 2366716
Alignment:
| Q |
118 |
ttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcacgatcaacctcattctcactcaaagtcctattatggcgatgc |
217 |
Q |
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| T |
2366819 |
ttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgatcaacctccttcgcacccaaactccttttatggcggtgc |
2366720 |
T |
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| Q |
218 |
tcct |
221 |
Q |
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|||| |
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| T |
2366719 |
tcct |
2366716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 2362209 - 2362117
Alignment:
| Q |
118 |
ttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcacgatcaacctcattctcactcaaagtcctattatggcg |
213 |
Q |
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| T |
2362209 |
ttcaattggtgtttcatcaagcaatgaaagcaaggcatccatgaagtcttgatgatcatgatcaatc---ttcttactcaaactccttttatggcg |
2362117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 2306510 - 2306474
Alignment:
| Q |
125 |
gttgttccattaagcaatgaaagcatcacatccatga |
161 |
Q |
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| T |
2306510 |
gttgttccatcaagcaatgaaagcaacacatccatga |
2306474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 2338835 - 2338787
Alignment:
| Q |
118 |
ttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtct |
166 |
Q |
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|||||| |||||||||| |||||||||||| | ||||||||||| |||| |
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| T |
2338835 |
ttcaatggttgttccatcaagcaatgaaagtaacacatccatgatgtct |
2338787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 4303980 - 4303907
Alignment:
| Q |
118 |
ttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcacgatcaacctcattct |
191 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||| |
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| T |
4303980 |
ttcaattgttgttccatcaagcaatgaaagcatcacatccatgaagtcttgatgatcaccatcaacctccttct |
4303907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 5805462 - 5805563
Alignment:
| Q |
118 |
ttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcacgatcaacctcattctcactcaaagtcctattatggcgatgc |
217 |
Q |
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|||||| |||||||||| |||||||||||| | |||||||||||||||| ||| |||| ||||||| || ||||||||||| || |||||||| || |
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| T |
5805462 |
ttcaatagttgttccatcaagcaatgaaagtaacacatccatgaagtcttgatcttcaccatcaacc---ttttcactcaaagttcttttatggcggcgc |
5805558 |
T |
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| Q |
218 |
tcctt |
222 |
Q |
| |
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||||| |
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| T |
5805559 |
tcctt |
5805563 |
T |
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