View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_high_4 (Length: 476)

Name: NF10179_high_4
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_high_4
NF10179_high_4
[»] chr7 (2 HSPs)
chr7 (154-469)||(48541985-48542300)
chr7 (15-161)||(48542488-48542634)
[»] chr8 (3 HSPs)
chr8 (206-468)||(9837124-9837386)
chr8 (15-85)||(9836576-9836646)
chr8 (15-84)||(14232531-14232600)
[»] chr3 (2 HSPs)
chr3 (15-84)||(5037359-5037428)
chr3 (205-303)||(41633007-41633105)
[»] chr1 (1 HSPs)
chr1 (14-85)||(23403562-23403633)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 154 - 469
Target Start/End: Complemental strand, 48542300 - 48541985
Alignment:
Q  154 ttttgatatcttatccgaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca 253  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48542300 ttttgatatcttatccaaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca 48542201  T
Q  254 ttccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtgatgatagagacgccaagaactacagctacagcttagaagtgggaggaa 353  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48542200 ttccagcttgaaacgtcacctgtttacatggcgtttcttcgattcatgggtgatgacagagacgccaagaactacagctacagcttagaagtgggaggaa 48542101  T
Q  354 atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcacaagaaagtgaaggatagtcatgacggcctaatcatataccgtaacat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48542100 atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcacaagaaagtgaaggatagtcatgacggcctaatcatataccgtaacat 48542001  T
Q  454 ggcacttttcttctca 469  Q
    ||||||||||||||||    
T  48542000 ggcacttttcttctca 48541985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 48542634 - 48542488
Alignment:
Q  15 cacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggtaattatgactcttaacaaaatttgctattta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48542634 cacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggtaattatgacccttaacaaaatttgctattta 48542535  T
Q  115 ttgatcggtttagttatttagcaactgatgaattcagatttttgata 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48542534 ttgatcggtttagttatttagcaactgatgaattcagatttttgata 48542488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 206 - 468
Target Start/End: Original strand, 9837124 - 9837386
Alignment:
Q  206 taggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtg 305  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||||||| || || |||| || | | || ||||||||||||||||| || |||||||| |    
T  9837124 taggtcttccactgttttggacaatatttctgtctccattttgaagcctttcaacttggaatggctccagtttacatggcatttctccgtttcatgggag 9837223  T
Q  306 atgatagagacgccaagaactacagctacagcttagaagtgggaggaaatggacgtaaactaacatttgaagggagtccaagaagcattagagatagtca 405  Q
    |||| ||||| |||| || ||||||||||||  | || || ||||| |  ||||| |||||||  |  || || |||||||| ||||||||||| || ||    
T  9837224 atgaaagagatgccaggagctacagctacagtcttgaggtaggagggagcggacgcaaactaatctacgagggcagtccaaggagcattagagacagcca 9837323  T
Q  406 caagaaagtgaaggatagtcatgacggcctaatcatataccgtaacatggcacttttcttctc 468  Q
    ||||||||| |  || |||||||| ||||| || |||||||| ||||||||||||||||||||    
T  9837324 caagaaagttagagacagtcatgatggcctcattatataccggaacatggcacttttcttctc 9837386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 9836576 - 9836646
Alignment:
Q  15 cacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggtaa 85  Q
    ||||||||| |||||||||||||| |||||||| | |||||||||||||||||| |||||| |||| ||||    
T  9836576 cacttttaatcatcgttatgtcaagtcaaatcccatggaagtagaaaatgctacatggatgttaacagtaa 9836646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 14232531 - 14232600
Alignment:
Q  15 cacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggta 84  Q
    ||||||||||||||||||||||||||||||||||   || || |||||||| || |||||| ||||||||    
T  14232531 cacttttaaccatcgttatgtcaaatcaaatcctcaagatgttgaaaatgcaacatggatgttaacggta 14232600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 5037428 - 5037359
Alignment:
Q  15 cacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggta 84  Q
    ||||||||| |||||||| |||||||||||||||   ||||| |||||||| || |||||| ||||||||    
T  5037428 cacttttaatcatcgttacgtcaaatcaaatcctcaagaagttgaaaatgccacatggatgttaacggta 5037359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 41633105 - 41633007
Alignment:
Q  205 gtaggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatggg 303  Q
    |||||| || ||||||||||| |||||||| || || ||||| ||||| || |||||||  | | | ||||||||||||||||| ||||| || |||||    
T  41633105 gtaggtatttcattgttttggccaatatttctgccttcatttcgaagcttttcagcttggcatggcccctgtttacatggcattccttcggtttatggg 41633007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 23403562 - 23403633
Alignment:
Q  14 tcacttttaaccatcgttatgtcaaatcaaatcctacggaagtagaaaatgctacttggatgctaacggtaa 85  Q
    |||| ||||||||||| |||||||||||||||||    ||||| |||||||| || ||||||||||| ||||    
T  23403562 tcacctttaaccatcgatatgtcaaatcaaatccacatgaagttgaaaatgccacatggatgctaaccgtaa 23403633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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