View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_high_40 (Length: 230)
Name: NF10179_high_40
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42089856 - 42090062
Alignment:
| Q |
1 |
atgcaagatgaaaacagtaaagtgaaagaaatacataccctctggagtggacatggcgaaaactgagaaatttcttcttgttcgaacaagttggggagaa |
100 |
Q |
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| T |
42089856 |
atgcaagatgaaaacagtaaagtgaaagaaatacataccatctggagtggacatggcgaaaactgagaaatttcttcttgttcgaacaagttggggagaa |
42089955 |
T |
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| Q |
101 |
gtgggtttaattggagaagttccaaagaattgtgataatgaagatgaagaggaatggaaagaacgggattgtactgggcgaaaacatgtgcccatgaaac |
200 |
Q |
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| T |
42089956 |
gtgggtttaattggagaagttcgaaagaattgtgataatgaagatgaaga------gaaagaacgggattgtactgggcgaaaacatgtgcccatgaaac |
42090049 |
T |
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| Q |
201 |
gaagtggagaaag |
213 |
Q |
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||||||||||||| |
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| T |
42090050 |
gaagtggagaaag |
42090062 |
T |
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