View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_high_5 (Length: 471)
Name: NF10179_high_5
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 471
Target Start/End: Complemental strand, 40696472 - 40696007
Alignment:
| Q |
10 |
gcagagatagtggttaagaacactttaaccaacattgattcttggcatttggatggatatagtttctttgttgttggatatggagaaggagaatggaaag |
109 |
Q |
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| T |
40696472 |
gcagagatagtggttaagaacactttaaccaacattgattcttggcatttggatggatatagtttctttgttgttggatatggagaaggagaatggaaag |
40696373 |
T |
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| Q |
110 |
aagagtcaaggtcaagttataacctatttgaccccgtcgttcgctcaactgtgcaagtgttccctggaggatggagtgcagtttatgtgtatcctgacaa |
209 |
Q |
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| T |
40696372 |
aagagtcaaggtcaagttataacctatttgaccccgtcgttcgctcaactgtgcaagtgttccctggaggatggagtgcagtttatgtgtatcctgacaa |
40696273 |
T |
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| Q |
210 |
tccaggaatgtggaacttgagatcacagaatttgaaaagttggtatttaggtgaagagctttatgtgagagtttttgatcctaatcctaaccctgccaaa |
309 |
Q |
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| T |
40696272 |
tccaggaatgtggaacttgagatcacagaatttgaaaagttggtatttaggtgaagagctttatgtgagagtttttgatcctaatcctaaccctgccaaa |
40696173 |
T |
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| Q |
310 |
gagaaacctcctccacagaatctacttttatgtggttagttacttattatatacttcatgtgaaaaatttatcttattgatgctat----tagggttatg |
405 |
Q |
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| T |
40696172 |
gagaaacctcctccacagaatctacttttatgtggttagttacttattatatacttcatgtgaaaaatttatcttattgatgctacgtactagggttatg |
40696073 |
T |
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| Q |
406 |
tgattgatgtcattgaattggttacatgattaaaggcaagtatcaaccttcagctccacctcctac |
471 |
Q |
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| T |
40696072 |
tgattgatgtcattgaattgtttacatgattaaaggcaagtatcaaccttcagctccacctcctac |
40696007 |
T |
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