View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_high_6 (Length: 442)

Name: NF10179_high_6
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_high_6
NF10179_high_6
[»] chr4 (2 HSPs)
chr4 (7-424)||(45135745-45136162)
chr4 (204-342)||(45124046-45124185)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 45135745 - 45136162
Alignment:
Q  7 tcaataagagaataaaaatttataattgaagaattaaaagctcttcaaaacactttatgaatgtaatagtttataggttctttcaaatactgacatgtac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45135745 tcaataagagaataaaaatttataattgaagaattaaaagctcttcaaaacactttatgaatgtaatagtttataggttctttcaaatactgacatgtac 45135844  T
Q  107 gatatgagttaaaagctcttcaaaacatcccattcaatgcaaactagagcattgcaccttgtgggaatgaaggctagttcattcaagttttgacatacag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45135845 gatatgagttaaaagctcttcaaaacatcccattcaatgcaaactagagcattgcaccttgtgggaatgaaggctagttcattcaagttttgacatacag 45135944  T
Q  207 catctgtgaattgtaaattacaatttgtaatattattatctgcagatggctactcttgctacccattttggtcttgggaagaaaacacacaggtacttgt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45135945 catctgtgaattgtaaattacaatttgtaatattattatctgcagatggctactcttgcttcccattttggtcttgggaagaaaacacacaggtacttgt 45136044  T
Q  307 gccagtaaaagcttatagcccatgccttctagtcattggctatacccgtaacttattagtgaaagttgaaatatctatttgcattttagccagaataata 406  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45136045 gccagtaaaagcttatagcccatgccttctagtcatttgctatacccgtaacttattagtgaaagttgaaatatctatttgcattttagccagaataata 45136144  T
Q  407 tattgttgggacaggtag 424  Q
    ||||||||||||||||||    
T  45136145 tattgttgggacaggtag 45136162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 342
Target Start/End: Original strand, 45124046 - 45124185
Alignment:
Q  204 cagcatctgtgaattgtaaattacaatttgtaatattattatctgcagatggctactcttgctacccattttggtcttgggaagaaaacacacaggtact 303  Q
    |||||||||| |||| ||| ||||||||||  || || ||  |||||||||||||||||||||||| |||||||||||||| || | ||||||||||| |    
T  45124046 cagcatctgtaaattttaagttacaatttgcgatgttgttcactgcagatggctactcttgctacctattttggtcttgggcagcagacacacaggtaat 45124145  T
Q  304 tgtgccagt-aaaagcttatagcccatgccttctagtcat 342  Q
    || ||| || ||||||||||| ||| ||| ||| ||||||    
T  45124146 tgagcccgtaaaaagcttatatcccttgcattccagtcat 45124185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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