View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_1 (Length: 622)
Name: NF10179_low_1
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 416 - 617
Target Start/End: Original strand, 33963582 - 33963783
Alignment:
| Q |
416 |
ccttcatctcgacttcatgaaaagcaagagaaagacatttataaaatccatgtcaagaattgattcataggttttttccctttatctatatctttatttt |
515 |
Q |
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| T |
33963582 |
ccttcatctcgacttcatgaaaagcaagagaaagacatttataaaatccatgtcaagaattgattcataggttttttccctttatctatatctttatttt |
33963681 |
T |
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| Q |
516 |
agggaattatctatatcttatggcatggtttatgccacgcacgtatgattaggtaaccaaaaaatttcctaaccacggttctgccacgaaccctatgctt |
615 |
Q |
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| T |
33963682 |
agggaattatttatatgttatggcatggtttgtgccacgcacgtatgattaggtaaccaaaaaatttcctaaccacggttctgccacgaaccctatgttt |
33963781 |
T |
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| Q |
616 |
ct |
617 |
Q |
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| T |
33963782 |
ct |
33963783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 33963180 - 33963361
Alignment:
| Q |
18 |
tagactacctgctcaatttctggtttacaaagataactcacaactagtggtccacgaaaacatagttttgatggacaaaaataagtcactatactaattt |
117 |
Q |
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| T |
33963180 |
tagactacctgttcaatttcttgtttacaaagataactcacaactagtggtctacgaaaacacagttttgatggacaaaaataagtcactatactaattt |
33963279 |
T |
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| Q |
118 |
ttatagagaaatgtctagagaacataatttttaatgtgaaaattggtggggatgaaaatattattttctttataaataaata |
199 |
Q |
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| T |
33963280 |
ttatagagaaatgtctagagaacatagtttttaatgtgaaaattggtggggatgaaaatattattttctttataaataaata |
33963361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 33963405 - 33963486
Alignment:
| Q |
240 |
tagatcaaattatatacttcgtcctcgttttgaccggtcctttagttcaacatctcaactcatgctactgtttacactctgg |
321 |
Q |
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| T |
33963405 |
tagatcaaattatatacttcgtcctcgttttgaccggtcctttagttcaacatctcaactcatgctactgtttacactctgg |
33963486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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