View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_10 (Length: 463)

Name: NF10179_low_10
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_10
NF10179_low_10
[»] chr7 (2 HSPs)
chr7 (149-463)||(41329823-41330137)
chr7 (17-92)||(41329691-41329766)
[»] chr2 (1 HSPs)
chr2 (152-279)||(26795521-26795647)
[»] chr1 (2 HSPs)
chr1 (155-230)||(12249401-12249476)
chr1 (152-230)||(4881933-4882011)
[»] chr3 (2 HSPs)
chr3 (167-223)||(52785380-52785436)
chr3 (167-223)||(52791644-52791700)
[»] chr5 (1 HSPs)
chr5 (171-223)||(9721157-9721208)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 149 - 463
Target Start/End: Original strand, 41329823 - 41330137
Alignment:
Q  149 tggtgttgttatttaaacaaataaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaatttaaattatgataggctattgggtcgc 248  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||  |||||||||||    
T  41329823 tggtgtttttatttaaacaaataaaattggcagcaaataaatttgttgtaaaaataaagtttatgagacaaatttgagttatgatagattattgggtcgc 41329922  T
Q  249 tcccatttaaattttatctaacgcgttgaatgnnnnnnnnttaataaataacaaattgacaagttaaggggccagccctccctgtccataccccgaacag 348  Q
    |||||||||||||||||| |||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  41329923 tcccatttaaattttatcaaacgcgttgaatgaaaaaaaattaataaataacaaattgacaagttagggggccagccctccctgtccatatccggaacag 41330022  T
Q  349 ttttttaaacaagttaaacggagtggaccaactgaaaaagacgagattaaaacttcagctcagtccataaaaaataacggcctacacgaactgtccaaaa 448  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||| | ||||||||| |||||||| ||||||||||||| ||| ||||||||||| ||     
T  41330023 ttttttaaacaagctaaacggagtggaccaattgaaagagacgagttcaaaacttcaactcagtccgtaaaaaataacggactaaacgaactgtcccaac 41330122  T
Q  449 aggttggacactttt 463  Q
    ||||||||| |||||    
T  41330123 aggttggaccctttt 41330137  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 41329691 - 41329766
Alignment:
Q  17 agtaaatttaggtgatcgagttcaaaatctcactccgtcccgcttaatggcgagttgatgggttaacccgccaaac 92  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  41329691 agtaaatttaggtgaccgagttcaaaatctcactccgtcccgcttaacggcgagttggtgggttaacccgccaaac 41329766  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 26795647 - 26795521
Alignment:
Q  152 tgttgttatttaaacaaataaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaatttaaattatgataggctattgggtcgctcc 251  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| || |||| ||| ||| |    
T  26795647 tgttgttatttaaacaaattaaattggtagcaaataaatttgttgtaaaaacaaa-cttatgagacaaatttaagttatgatgggttattaggttgctac 26795549  T
Q  252 catttaaattttatctaacgcgttgaat 279  Q
    |||||||||||| ||||||| |||||||    
T  26795548 catttaaattttgtctaacgtgttgaat 26795521  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 12249401 - 12249476
Alignment:
Q  155 tgttatttaaacaaataaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaatttaaattat 230  Q
    ||||||||| | ||||||||||||||||||||||| |||| ||||||   ||||||||||||||||| | ||||||    
T  12249401 tgttatttataaaaataaaattgacagcaaataaaattgtggtaaaacacaagcttatgagacaaatctgaattat 12249476  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 4881933 - 4882011
Alignment:
Q  152 tgttgttatttaaacaaataaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaatttaaattat 230  Q
    |||||||||||| | ||||||||||| |||||||| ||||||  ||||||   | | ||||||||||||||||| ||||    
T  4881933 tgttgttatttataaaaataaaattggcagcaaatcaatttgcggtaaaacacatgtttatgagacaaatttaagttat 4882011  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 52785380 - 52785436
Alignment:
Q  167 aaataaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaattt 223  Q
    |||||||||||||| ||||||||||||| ||||||   |||||||||| ||||||||    
T  52785380 aaataaaattgacaacaaataaatttgtggtaaaacataagcttatgatacaaattt 52785436  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 52791644 - 52791700
Alignment:
Q  167 aaataaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaattt 223  Q
    |||||||||||||| ||||||||||||| ||||||   |||||||||| ||||||||    
T  52791644 aaataaaattgacaacaaataaatttgtggtaaaacataagcttatgatacaaattt 52791700  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 9721208 - 9721157
Alignment:
Q  171 aaaattgacagcaaataaatttgttgtaaaaataaagcttatgagacaaattt 223  Q
    ||||||||||||| |||||||||| || ||||| || ||||||||||||||||    
T  9721208 aaaattgacagcagataaatttgtggt-aaaatcaaacttatgagacaaattt 9721157  T

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