View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_102 (Length: 240)
Name: NF10179_low_102
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_102 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1058322 - 1058540
Alignment:
| Q |
18 |
agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaacaatactaatctttacaaatatctccaaaattaa |
117 |
Q |
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| T |
1058322 |
agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaacaatactaatctttacaaatatctccaaaattaa |
1058421 |
T |
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| Q |
118 |
aaaattattcaatgtaccatacataatacaatgttgctttagagggcactaggacattttacaattctgtaacatactcattgggggtgcaaattgcagg |
217 |
Q |
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| T |
1058422 |
aaaattcttcaatgtac----cataatacaattttgctttagagggcactaggacattttacaattctgtaacatactcattgggggtgcaaattgcagg |
1058517 |
T |
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| Q |
218 |
gtttgatggggttgaaatccatg |
240 |
Q |
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| T |
1058518 |
gtttgatggggttgaaatccatg |
1058540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 1071125 - 1071245
Alignment:
| Q |
18 |
agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaacaatactaatctttacaaatatctccaaaattaa |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
1071125 |
agatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagctggtaactttactaatctttacaaatgtctcaaaaattaa |
1071224 |
T |
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| Q |
118 |
aaaattattcaatgtaccata |
138 |
Q |
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| T |
1071225 |
taaattatttaatgtatcata |
1071245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 1065386 - 1065471
Alignment:
| Q |
18 |
agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaacaatactaatctttacaaat |
103 |
Q |
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| T |
1065386 |
agatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaactttactaatctttacaaat |
1065471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 1046330 - 1046421
Alignment:
| Q |
22 |
gaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaacaatactaatctttacaaatatctccaaaa |
113 |
Q |
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| T |
1046330 |
gaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaacttcacctatctttaccaatctctccaaaa |
1046421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 1033388 - 1033453
Alignment:
| Q |
18 |
agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
83 |
Q |
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| T |
1033388 |
agatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaa |
1033453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 1043780 - 1043845
Alignment:
| Q |
18 |
agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
83 |
Q |
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| T |
1043780 |
agatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa |
1043845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 1052990 - 1053051
Alignment:
| Q |
22 |
gaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
83 |
Q |
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| T |
1052990 |
gaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
1053051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 1065545 - 1065632
Alignment:
| Q |
152 |
tgctttagagggcactaggacattttacaattctgtaacatactcattgggggtgcaaattgcagggtttgatggggttgaaatccatg |
240 |
Q |
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|||||||||| ||||| ||||||||||||||| | ||||||||| | | ||| |||||||||||| |||||||||||||||||||||| |
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| T |
1065545 |
tgctttagagagcactgggacattttacaattatataacatacttactagggc-gcaaattgcaggatttgatggggttgaaatccatg |
1065632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 1071282 - 1071359
Alignment:
| Q |
162 |
ggcactaggacattttacaattctgtaacatactcattgggggtgcaaattgcagggtttgatggggttgaaatccatg |
240 |
Q |
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| T |
1071282 |
ggcactaggacattttccaattatgtatcatacttagtgggg-tacaaattgcaggatttgatggggttgaaatccatg |
1071359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 1641126 - 1641080
Alignment:
| Q |
37 |
gtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
83 |
Q |
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| T |
1641126 |
gtcaatgacttcagacttgctgcaaggaatgctatagcagctggtaa |
1641080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 1053238 - 1053275
Alignment:
| Q |
203 |
ggtgcaaattgcagggtttgatggggttgaaatccatg |
240 |
Q |
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| T |
1053238 |
ggtgcaaattgtaggttttgatggggttgaaatccatg |
1053275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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