View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_low_106 (Length: 239)
Name: NF10179_low_106
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_106 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25472985 - 25472759
Alignment:
| Q |
1 |
tgcagtgtagtgaatatttcctcctcgttaatgattgaattggtgagaagatctattcttcctttttatgatttacatggtgcaattagatcttttgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25472985 |
tgcagtgtagtgaatatttcctcctcgttaatgattgaattggtgagaggatctattcttcctttttatgatttacatggtgcaattagatcttttgttc |
25472886 |
T |
|
| Q |
101 |
agttactaaagctaagaggtttgtgaagcaatgcatcaaaatcctaatatgtgttatgtattctcattttctttaattttcaggttccgtgcctaagaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25472885 |
agttactaaagctaagaggtttgtgaagcaatgcatcaaaatcctaatatgtgttatgtattctcattttctttaattttcaggttccgtgcctaagaga |
25472786 |
T |
|
| Q |
201 |
caattatgcatacattttatatgatgt |
227 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
25472785 |
caattatgcatatattttatatgatgt |
25472759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University