View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_107 (Length: 239)
Name: NF10179_low_107
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_107 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38038004 - 38037782
Alignment:
| Q |
1 |
aaggtctttatacactctctcaggttccagattcattttgataaaaaatccttagctctctacaaaacaactaataaatttaattagcattaacgaaaac |
100 |
Q |
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| T |
38038004 |
aaggtctttatacactctctcaggttccggattcattttgataaaaaatccttagctctctacaaaacaactaataaatttaattagcgttaacgaaaac |
38037905 |
T |
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| Q |
101 |
aaacaaatgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatgaatggtgttttgatcttgtagattgt |
200 |
Q |
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| T |
38037904 |
aaacaaatgcataacaataaatcaatttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatgaatggtgttttgatcttgtagattgt |
38037805 |
T |
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| Q |
201 |
attggtagaagtaggcacccttc |
223 |
Q |
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| T |
38037804 |
attggtagaagtaggcacccttc |
38037782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 10625483 - 10625335
Alignment:
| Q |
8 |
ttatacactctctcaggttccagattcattttgataaaaaatccttagctctctacaaaacaactaataaatttaattagcattaacgaaaacaaacaaa |
107 |
Q |
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| T |
10625483 |
ttatacactctctgagatgacatatccattttgataaga--tccttagccctctacaaaacaattagtaaatttagttagcgttaacgaaaacaaataaa |
10625386 |
T |
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| Q |
108 |
tgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaacca |
158 |
Q |
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| T |
10625385 |
tgcataacaataaatcaatttaaatttcacgaaaaaagcttacatgaacca |
10625335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 10625754 - 10625847
Alignment:
| Q |
61 |
tacaaaacaactaataaatttaattagcattaacgaaaacaaacaaatgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaa |
155 |
Q |
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|||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||| |
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| T |
10625754 |
tacaaaacaactaataaatttagttagcgttaatgaaaacaaataaatgcataacaataaatcaatttaaatttcatg-aaaaagcttacatgaa |
10625847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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