View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_low_109 (Length: 238)
Name: NF10179_low_109
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_109 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10580664 - 10580885
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10580664 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgtg |
10580763 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10580764 |
ttgagttaaagaaaatctcaagggagaaaagatttttgtttgtgttggatgatctgtggaatgacaattgtaatgattgggatgagctagtaagtccctt |
10580863 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10580864 |
cattaatggaaaacctggaagc |
10580885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10126991 - 10127212
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10126991 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttgatgtccttcgag |
10127090 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10127091 |
ttgcgttaaagaaaatctcgagggaaaaaagatttttgtttgtgttggacgatctatggaatgacaattgtaatgattgggatgagctagtaagtccctt |
10127190 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10127191 |
cattaatggaaaacctggaagc |
10127212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10032066 - 10032287
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10032066 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggatagcaaagatcttgatgtccttcgag |
10032165 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
10032166 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgttttggatgatctgtggaatgacaattataatgattggggtgaactagtaagtccctt |
10032265 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10032266 |
cattgatggaaaacctggaagc |
10032287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10363804 - 10363583
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10363804 |
tgtgtctctgaggattttgatattatgagagtaacaaagtctctccttgaatctgccacttccataacttcggaaagcaataatcttgatgtccttcgag |
10363705 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| | ||||||||||| ||| |||||||| ||||| |
|
|
| T |
10363704 |
ttgagttaaagaaaatctcgagggagaaaagatatttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagcccctt |
10363605 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10363604 |
cattgatggaaaacctggaagc |
10363583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10663589 - 10663810
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
10663589 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttgggatagcaaagatcttgatgtccttcgag |
10663688 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| ||| |||| ||||||||| |
|
|
| T |
10663689 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttcgatgatctgtggaatgacaattataatgattggagtgaactagcaagtccctt |
10663788 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10663789 |
cattgatggaaaacctggaagc |
10663810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10088853 - 10089074
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
10088853 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttggtgtccttcaag |
10088952 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| || |||||||||||||| |
|
|
| T |
10088953 |
ttgagttaaagaaaaactcgagggagaaaagatttttgtttgtgttggatgatctgtggaatgacaattataatgattggattgcactagtaagtccctt |
10089052 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10089053 |
cattgatggaaaacctggaagc |
10089074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10195736 - 10195957
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
10195736 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttggtgtccttcaag |
10195835 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| || |||||||||||||| |
|
|
| T |
10195836 |
ttgagttaaagaaaaactcgagggagaaaagatttttgtttgtgttggatgatctgtggaatgacaattataatgattggattgcactagtaagtccctt |
10195935 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10195936 |
cattgatggaaaacctggaagc |
10195957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10184305 - 10184526
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10184305 |
tgtgtgtccgaggattttgatattatgagagtaaccaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttgatgtccttcgag |
10184404 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
10184405 |
ttgagttaaagaaacattcaagggagaaaagatttttgtttgtattggatgatctgtggaatgacagttatgatgattgggatgagctagtaagtccctt |
10184504 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
10184505 |
cattgatggaaaacctggaagc |
10184526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9838924 - 9839145
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
9838924 |
tgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttgatgtccttcgag |
9839023 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
9839024 |
ttgcgttaaagaaaaactcaagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtccctt |
9839123 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| |||||||||| |||||| |
|
|
| T |
9839124 |
cattgatggaaaacccggaagc |
9839145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9849802 - 9850023
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
9849802 |
tgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttgatgtccttcgag |
9849901 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
9849902 |
ttgcgttaaagaaaaactcaagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtccctt |
9850001 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| |||||||||| |||||| |
|
|
| T |
9850002 |
cattgatggaaaacccggaagc |
9850023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 11769300 - 11769518
Alignment:
| Q |
4 |
gtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgagttg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| | ||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
11769300 |
gtgtctgaggattttgatattatgagagtaaccaggtctctccttgaatcggtcacttcaagaacttgggatagcaataatcttgatatccttcgagttg |
11769399 |
T |
|
| Q |
104 |
agttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtcccttcat |
203 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||| ||| |||||||||||||||| |
|
|
| T |
11769400 |
agttaaagaaaaacttgagggagaaaagatttttgtttgtgttagatgatatgtggaatgacaattataatgattggggtgaactagtaagtcccttcag |
11769499 |
T |
|
| Q |
204 |
taatggaaaacctggaagc |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11769500 |
taatggaaaacctggaagc |
11769518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10434050 - 10433829
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||| | |
|
|
| T |
10434050 |
tgtgtgtctcaggattttgatattttgaaagtaaccaagtctctccttgaatcggtcacttccagaacttgggatagcaataatcttgatgtccttcgtg |
10433951 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
10433950 |
ttgagttaaagaaaaactcgagggagaaaagatttttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagtccctt |
10433851 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| |||||||||| |||||| |
|
|
| T |
10433850 |
cattgatggaaaacccggaagc |
10433829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10260761 - 10260982
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | || || ||| | |||||||||||| ||||||||| |
|
|
| T |
10260761 |
tgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaatcagtcacttctagaaattgggatatcaataatcttgacatccttcgag |
10260860 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||| ||| |||||||| ||||| |
|
|
| T |
10260861 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagcccctt |
10260960 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
10260961 |
cgttgatggaaaacctggaagc |
10260982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10375851 - 10375630
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| | ||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
10375851 |
tgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtccttcgag |
10375752 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||| |||||||||||||| |
|
|
| T |
10375751 |
ttgcgttaaagaaaaaatcaagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaattattatgattggggtgaactagtaagtccctt |
10375652 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| |||||||||| |||||| |
|
|
| T |
10375651 |
cattgatggaaaacccggaagc |
10375630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10077332 - 10077553
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||| ||| | |||| |||||||||||||||||| |
|
|
| T |
10077332 |
tgtgtgtctgaggattttgatattatgagagtaaccaagtctctccttgaatcgatcacttctagaacttgggataacaatgatcttgatgtccttcgag |
10077431 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||| | || |||||||||||| || ||||||||||| |
|
|
| T |
10077432 |
ttgagttaaaaaaaaactcgagggataaaagatttttgtttgtgttagatgatatgtggaatgacaattatagtgattgggatgaacttgtaagtccctt |
10077531 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||| | ||||||| |
|
|
| T |
10077532 |
cattgatggaaagcatggaagc |
10077553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 10527492 - 10527641
Alignment:
| Q |
72 |
ggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgt |
171 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||| | |
|
|
| T |
10527492 |
ggaaagcaataatcttgatatccttcgagttcagttaaagaaaatctcaagggagaagagatttttgtttgtgttggatgatctatggaatgacaattac |
10527591 |
T |
|
| Q |
172 |
aatgattgggatgagctagtaagtcccttcattaatggaaaacctggaag |
221 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
10527592 |
aatgattgggatgagctagtaagtccactcattgatggaaaacctggaag |
10527641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11131032 - 11130821
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||| || ||||||||||||||| | |||||||| || |||||||||||||||||||||| | ||| ||||| ||||||||||||| | ||||||| |
|
|
| T |
11131032 |
tgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttgattttcttcgag |
11130933 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||| | ||||||| | ||| || |||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||| || |||| ||| || |
|
|
| T |
11130932 |
ttgaactgaagaaaactttgagagacaaaagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatgaacttgtaactccttt |
11130833 |
T |
|
| Q |
201 |
cattaatggaaa |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
11130832 |
gattaatggaaa |
11130821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11148860 - 11148649
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||| || ||||||||||||||| | |||||||| || |||||||||||||||||||||| | ||| ||||| ||||||||||||| | ||||||| |
|
|
| T |
11148860 |
tgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttgattttcttcgag |
11148761 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||| | ||||||| | ||| | |||||||||||||||||||||||||| || ||||||||||| | ||||||||||||||| || |||| || || |
|
|
| T |
11148760 |
ttgaactgaagaaaactttgagagccaaaagatttttgtttgtgttggatgacttatggaatgacaattataatgattgggatgaacttgtaacaccttt |
11148661 |
T |
|
| Q |
201 |
cattaatggaaa |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
11148660 |
gattaatggaaa |
11148649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11160023 - 11159812
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| || |||| ||||||||||||||||| | | ||| ||||| ||||||||||||| | ||||||| |
|
|
| T |
11160023 |
tgtgtatctgaggattttgatattttatctgtaactaaaactcttcttgaatctgtcacttcaagagcttgggaaaccaataatcttgattttcttcgag |
11159924 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||| ||||||||| | ||| || |||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||| || |||| ||| || |
|
|
| T |
11159923 |
ttgaactaaagaaaactttgagcgacaaaagatttttgtttgtgttggatgacctttggaatgacaattataatgattgggatgaacttgtaactccttt |
11159824 |
T |
|
| Q |
201 |
cattaatggaaa |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
11159823 |
gattaatggaaa |
11159812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 11781917 - 11781768
Alignment:
| Q |
72 |
ggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgt |
171 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| || || || | |||||||||||||||||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
11781917 |
ggaaagcgataatcttgatatccttcgagttgaattgaaaaagaactcgagggagaaaagatttttgtttgtgttagatgatttgtggaatgatgattac |
11781818 |
T |
|
| Q |
172 |
aatgattgggatgagctagtaagtcccttcattaatggaaaacctggaag |
221 |
Q |
| |
|
||||||||| ||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
11781817 |
aatgattggcttgagctagtaagtccactcaatgatggaaaacctggaag |
11781768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 10889369 - 10889580
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||| |||||||||||||||||| | | ||||| || |||| ||||||||||| ||||| | | ||| ||||| ||||||||| ||| | ||||||| |
|
|
| T |
10889369 |
tgtgtatctgaggattttgatattttaactgtaactaaaactcttcttgaatctgtgacttcaagagcttgggaaaacaataatctagattttcttcgag |
10889468 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
|||| ||||||||| | ||| || |||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||| || |||| ||| || |
|
|
| T |
10889469 |
ttgaactaaagaaaactttgagagacaaaagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatgaacttgtaactccttt |
10889568 |
T |
|
| Q |
201 |
cattaatggaaa |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
10889569 |
gattaatggaaa |
10889580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 8861389 - 8861560
Alignment:
| Q |
41 |
ctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtt |
140 |
Q |
| |
|
|||| ||||||||||||||||| | | ||| ||||| ||||||||||||| | ||||||||||| ||||||||| | ||| || |||||||||||||| |
|
|
| T |
8861389 |
ctcttcttgaatctgtcacttcaagagcttgggaaaacaataatcttgattttcttcgagttgaactaaagaaaacattgagagacaaaagatttttgtt |
8861488 |
T |
|
| Q |
141 |
tgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtcccttcattaatggaaa |
212 |
Q |
| |
|
|||||||||||| | ||||||||||| | |||||| |||||||| || |||| ||| || ||||||||||| |
|
|
| T |
8861489 |
tgtgttggatgacctatggaatgacaattataatgagtgggatgaacttgtaactcctttgattaatggaaa |
8861560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 10517619 - 10517762
Alignment:
| Q |
72 |
ggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgt |
171 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| || || || | |||||||||||||||||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
10517619 |
ggaaagcgataatcttgatatccttcgagttgaattgaaaaagaactcgagggagaaaagatttttgtttgtgttagatgatttgtggaatgatgattac |
10517718 |
T |
|
| Q |
172 |
aatgattgggatgagctagtaagtcccttcattaatggaaaacc |
215 |
Q |
| |
|
||||||||| ||| ||||||||||| ||| | |||||||||| |
|
|
| T |
10517719 |
aatgattggcttgaactagtaagtccactcaatgatggaaaacc |
10517762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 13333039 - 13333159
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||| || || |||| || |||||| |||||||||||||| ||||||||||| ||||||||||||| | || |
|
|
| T |
13333039 |
gaaaacaataatcttgattttcttcgagttgaattgaataaaaacttgagggataaaagatttttgttagtgttggatgacctgtggaatgacaattata |
13333138 |
T |
|
| Q |
173 |
atgattgggatgagctagtaa |
193 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
13333139 |
atgattgggatgagttagtaa |
13333159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 13161115 - 13161248
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||| || |||||| |||||||||||||| ||| |||| ||| |||||||||| | | || |
|
|
| T |
13161115 |
gaaagcaataatcttgattctcttcgagttgagttgaataaaaacttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttata |
13161214 |
T |
|
| Q |
173 |
atgattgggatgagctagtaagtcccttcattaa |
206 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||| |
|
|
| T |
13161215 |
atgattgggatgagttagtaactccattgattaa |
13161248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 13171166 - 13171299
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||| || || ||| || |||||| |||||||||||||| ||| |||| ||| |||||||||| | | || |
|
|
| T |
13171166 |
gaaaacaataatcttgattttcttcgagttgaattgaatcaaaacttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttata |
13171265 |
T |
|
| Q |
173 |
atgattgggatgagctagtaagtcccttcattaa |
206 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||| |
|
|
| T |
13171266 |
atgattgggatgagttagtaactccattgattaa |
13171299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 13344224 - 13344357
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||| || || ||| || |||||| |||||||||||||| ||| |||| ||| |||||||||| | | || |
|
|
| T |
13344224 |
gaaaacaataatcttgattttcttcgagttgaattgaatcaaaacttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttata |
13344323 |
T |
|
| Q |
173 |
atgattgggatgagctagtaagtcccttcattaa |
206 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||| |
|
|
| T |
13344324 |
atgattgggatgagttagtaactccattgattaa |
13344357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 10500709 - 10500802
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgaca |
166 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| |||| | || ||| | ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
10500709 |
gaaagcaataatcttgatatccttcaagttgagttaatgaaacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgaca |
10500802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 11153739 - 11153559
Alignment:
| Q |
41 |
ctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtt |
140 |
Q |
| |
|
|||||||||||||||||||||| | | | | ||||| || ||||||||| | ||||||||||||||||||||||| ||| || |||||||||| | |
|
|
| T |
11153739 |
ctctccttgaatctgtcacttcaagagcatatgaaagtaacaatcttgattttcttcgagttgagttaaagaaaattctgagaga-caaagattttttgt |
11153641 |
T |
|
| Q |
141 |
tgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtcccttcattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||||||||||| || |||||||| || | ||| |||| ||||| || |||| ||| || ||| |||||||| ||||||| |
|
|
| T |
11153640 |
tgtgttggatgacttatggaatgataattataacgattcagatgaacttgtaactccattgatttatggaaaaagtggaagc |
11153559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 13289800 - 13289933
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || ||| || |||||| |||||||||||||| ||| |||| ||| |||||||||| | | || |
|
|
| T |
13289800 |
gaaagcaataatcttgattctcttcgagttgaactgaatcaaaacttgagggataaaagatttttgttggtgctggacgatctgtggaatgatagttata |
13289899 |
T |
|
| Q |
173 |
atgattgggatgagctagtaagtcccttcattaa |
206 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||| |
|
|
| T |
13289900 |
atgattgggatgagttagtaactccattgattaa |
13289933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10517527 - 10517580
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
54 |
Q |
| |
|
||||| ||||||||||||||| |||| |||| ||| |||||| ||||||||||| |
|
|
| T |
10517527 |
tgtgtatctgaggattttgatgttattagagcaaccaagtctatccttgaatct |
10517580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26906960 - 26907181
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
26906960 |
tgtgtgtctgaggattttgatattatgagagtaaccaaatctctccttgaatcggtcacttccagaacttgggataccaataatcttgatgtccttcgag |
26907059 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagctagtaagtccctt |
200 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||| | || ||||||||| || || ||||||||||| |
|
|
| T |
26907060 |
ttgagttaaggaaaaactcaagggagaaaagatttttgtttgtgttggatgacctgtggaacgacaattatagtgattgggaagaacttgtaagtccctt |
26907159 |
T |
|
| Q |
201 |
cattaatggaaaacctggaagc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
26907160 |
cattcatggaaaacctggaagc |
26907181 |
T |
|
Back To:
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Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 135822 - 135689
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||| || || ||| || |||||| |||||||||||||| ||| |||| ||| |||||||||| | | || |
|
|
| T |
135822 |
gaaaacaataatcttgattttcttcgagttgaattgaatcaaaacttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttata |
135723 |
T |
|
| Q |
173 |
atgattgggatgagctagtaagtcccttcattaa |
206 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||| |
|
|
| T |
135722 |
atgattgggatgagttagtaactccattgattaa |
135689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 145873 - 145740
Alignment:
| Q |
73 |
gaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgta |
172 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||| || || ||| || |||||| |||||||||||||| ||| |||| ||| |||||||||| | | || |
|
|
| T |
145873 |
gaaaacaataatcttgattttcttcgagttgaattgaatcaaaacttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttata |
145774 |
T |
|
| Q |
173 |
atgattgggatgagctagtaagtcccttcattaa |
206 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||| |
|
|
| T |
145773 |
atgattgggatgagttagtaactccattgattaa |
145740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 31679660 - 31679519
Alignment:
| Q |
80 |
ataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattg |
179 |
Q |
| |
|
||||||||||| | |||||||| | |||||| ||| || || || |||||||||||||||||||||||||| |||||||||| | || ||||||||| |
|
|
| T |
31679660 |
ataatcttgattttcttcgagtcaaattaaagcaaaacttgaagggaaaaagatttttgtttgtgttggatgacatgtggaatgatagctataatgattg |
31679561 |
T |
|
| Q |
180 |
ggatgagctagtaagtcccttcattaatggaaaacctggaag |
221 |
Q |
| |
|
| || | ||||| | |||||||||| ||||| || ||||||| |
|
|
| T |
31679560 |
gcatcatctagtcactcccttcattgatggagaatctggaag |
31679519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 29836706 - 29836893
Alignment:
| Q |
1 |
tgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtccttcgag |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || |||||||||||| ||||||||| | | | | | | |||||| |||||| | ||||||| |
|
|
| T |
29836706 |
tgtgtgtctgaagattttgatatgttgagagtaaccaaatctctccttgaagttgtcacttcaagagaatggaataccaataaccttgatcttcttcgag |
29836805 |
T |
|
| Q |
101 |
ttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgtaatgattgggatgagct |
188 |
Q |
| |
|
|||| || ||||||| | || | |||||||||||| |||| ||||||||| | |||||||| ||| || ||||||||||||||| |
|
|
| T |
29836806 |
ttgaattgaagaaaaatttgaacaacaaaagatttttgattgtattggatgatgtttggaatgaaaacggttgtgattgggatgagct |
29836893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 17852858 - 17852708
Alignment:
| Q |
72 |
ggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaactgt |
171 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||| |||| |||| | || ||| | ||||||||||||||||||||| || || ||||||||||| | |
|
|
| T |
17852858 |
ggaaagcgataatcttgatatcctccgagttgaattaatgaaacaattgatggatagaagatttttgtttgtgttggacgacttatggaatgacaattac |
17852759 |
T |
|
| Q |
172 |
aatgattgggatgagctagtaagtcccttcattaatggaaaacctggaagc |
222 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| |||||| |||||||| |
|
|
| T |
17852758 |
gttgattggagtgagctagtaactcccttgtttaagggaaaagctggaagc |
17852708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 17852938 - 17852895
Alignment:
| Q |
13 |
gattttgatattatgagagtaacaaagtctctccttgaatctgt |
56 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
17852938 |
gattttgatgttgtgagagtaaccaagtctctccttgaatctgt |
17852895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 44957623 - 44957528
Alignment:
| Q |
72 |
ggaaagcaataatcttgatgtccttcgagttgagttaaagaaaatctcgagggagaaaagatttttgtttgtgttggatgatttgtggaatgacaa |
167 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||| |||| |||| | || ||| | ||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
44957623 |
ggaaagcgataatcttgatatccttcaagttgaattaatgaaacatttgatggatagaagatttttgtttgtgttggacgacatatggaatgacaa |
44957528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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