View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_116 (Length: 219)

Name: NF10179_low_116
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_116
NF10179_low_116
[»] chr1 (1 HSPs)
chr1 (1-84)||(48407807-48407886)
[»] chr7 (2 HSPs)
chr7 (48-138)||(5634114-5634204)
chr7 (48-138)||(11568481-11568571)
[»] chr6 (1 HSPs)
chr6 (48-138)||(19111271-19111361)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 48407886 - 48407807
Alignment:
Q  1 taaacataatgaatacgtctatgtatcattctgtgatcgaggacaatcttgtgtggacgaaagaaaataatggtgagtactcgg 84  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||||    
T  48407886 taaacataatgaatatgtctatgtatcattctgtgaccgaggacaatct----tggacgaaagaaaataatggtgagtactcgg 48407807  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 5634114 - 5634204
Alignment:
Q  48 cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta 138  Q
    ||||| |||||||| ||||||||||||||||| || ||| | ||||| |||||  |||||||||| || || |||||| | ||||||||||    
T  5634114 cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta 5634204  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 11568571 - 11568481
Alignment:
Q  48 cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta 138  Q
    ||||| |||||||| ||||||||||||||||| || ||| | ||||| |||||  |||||||||| || || |||||| | ||||||||||    
T  11568571 cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta 11568481  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 19111361 - 19111271
Alignment:
Q  48 cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta 138  Q
    ||||| |||||||| ||||||||||||||||| || ||| | ||||| |||||  |||||||||| || || |||||| | ||||||||||    
T  19111361 cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta 19111271  T

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