View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_117 (Length: 218)
Name: NF10179_low_117
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_117 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 8288726 - 8288531
Alignment:
| Q |
4 |
ttttcttaagaaaataacggaataattatgagagaattggaaaatcaatgagtacatagaacagcggaatggaaaataatattgagtatgaaagaattgt |
103 |
Q |
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| T |
8288726 |
ttttcttaagaaaataacggaataattatgagagaattggaaaatcaatgagtacatagaacagcgaaatggaaaataatattgagtatgaaagaattgt |
8288627 |
T |
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| Q |
104 |
tacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaactcctaactaatgtaactagtttttacaactcttaaatacttt |
199 |
Q |
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| T |
8288626 |
tacatcaattaaatgagtacattaaggcttatatagccaattagaccaactaactcctaactaatgtaactagtttttacaactctaaaatacttt |
8288531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 19828791 - 19828618
Alignment:
| Q |
1 |
aaattttcttaagaaaataacggaataattatgagagaattggaaaatcaatgagtacatagaacagcggaatggaaaataatattgagtatgaaagaat |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
19828791 |
aaattttctcaagaaaataacggaataattatgagagaattggaaagtgaatgagtacatagaaaagcgaaatggaaaataatattgagtatgaaagaat |
19828692 |
T |
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| Q |
101 |
tgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaactcctaactaatgtaact |
174 |
Q |
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| T |
19828691 |
tgttacatcaatgaaatgattatattaaggcttatatagccaattagaccaactaacttctaactaatgtaact |
19828618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 26925799 - 26925900
Alignment:
| Q |
57 |
acatagaacagcggaatggaaaataatattgagtatgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaa |
156 |
Q |
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| T |
26925799 |
acatagaaaagtgaaaaggaaaataatattgattatgagagaattgttacattaacta-----gtacattaaggcttatatagccaattaaaccaactaa |
26925893 |
T |
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| Q |
157 |
ctcctaa |
163 |
Q |
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||||||| |
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| T |
26925894 |
ctcctaa |
26925900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 26585886 - 26585842
Alignment:
| Q |
131 |
cttatatagccaattacaccaactaactcctaactaatgtaacta |
175 |
Q |
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| T |
26585886 |
cttatatagccagttagaccaactaactcctaactaatttaacta |
26585842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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