View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_118 (Length: 218)

Name: NF10179_low_118
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_118
NF10179_low_118
[»] chr3 (2 HSPs)
chr3 (15-201)||(1138408-1138594)
chr3 (135-176)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (139-176)||(3110531-3110568)
chr2 (135-172)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (135-176)||(6025961-6026002)
chr1 (139-174)||(1118941-1118976)
chr1 (131-176)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (138-170)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (130-173)||(32888960-32889003)
chr7 (138-174)||(7245942-7245978)
[»] chr6 (2 HSPs)
chr6 (140-174)||(2730831-2730865)
chr6 (138-175)||(26373115-26373152)
[»] chr4 (2 HSPs)
chr4 (135-173)||(207500-207538)
chr4 (139-176)||(47789196-47789233)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 1138594 - 1138408
Alignment:
Q  15 atgaaaatggcattttttgaagctaatgtgtgaacgaaagatggggacatcacgacggtggttcaatatcgaccactctgtcgtagctgtatgaaggtaa 114  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1138594 atgaaaatggcattttttgaagctaatctgtgaatgaaagatggggacatcatgacggtggttcaatatcgaccactctgtcgtagctgtatgaaggtaa 1138495  T
Q  115 ataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaacatagtataatt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138494 ataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaacatagtataatt 1138408  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 28802805 - 28802764
Alignment:
Q  135 tatgctatttagtacaaagagttgtcaaatagtggctatagc 176  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  28802805 tatgctatttaatataaagtgttgtcaaatagtggctatagc 28802764  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 3110568 - 3110531
Alignment:
Q  139 ctatttagtacaaagagttgtcaaatagtggctatagc 176  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3110568 ctatttagtacaaagcgttgtcaaatagtggctatagc 3110531  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 28044746 - 28044709
Alignment:
Q  135 tatgctatttagtacaaagagttgtcaaatagtggcta 172  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  28044746 tatgcgatttagtacaaagtgttgtcaaatagtggcta 28044709  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 6026002 - 6025961
Alignment:
Q  135 tatgctatttagtacaaagagttgtcaaatagtggctatagc 176  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  6026002 tatgctatttagtacaaaatgttgtcaaatagtggctatagc 6025961  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 1118941 - 1118976
Alignment:
Q  139 ctatttagtacaaagagttgtcaaatagtggctata 174  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1118941 ctatttagtacaaagtgttgtcaaatagtggctata 1118976  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 26161641 - 26161596
Alignment:
Q  131 gtggtatgctatttagtacaaagagttgtcaaatagtggctatagc 176  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||    
T  26161641 gtggtatgctatttagtacaaagtattgtcaaatagcagctatagc 26161596  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 28734201 - 28734169
Alignment:
Q  138 gctatttagtacaaagagttgtcaaatagtggc 170  Q
    |||||||||||||||||||||||||||||||||    
T  28734201 gctatttagtacaaagagttgtcaaatagtggc 28734169  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 32888960 - 32889003
Alignment:
Q  130 agtggtatgctatttagtacaaagagttgtcaaatagtggctat 173  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  32888960 agtgatatgctatttagtacaaagtattgtcaaatagtggctat 32889003  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 7245978 - 7245942
Alignment:
Q  138 gctatttagtacaaagagttgtcaaatagtggctata 174  Q
    |||||||||||||||| |||||||||||| |||||||    
T  7245978 gctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 2730865 - 2730831
Alignment:
Q  140 tatttagtacaaagagttgtcaaatagtggctata 174  Q
    |||||||||||||| ||||||||||||||||||||    
T  2730865 tatttagtacaaagtgttgtcaaatagtggctata 2730831  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 26373115 - 26373152
Alignment:
Q  138 gctatttagtacaaagagttgtcaaatagtggctatag 175  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  26373115 gctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 207500 - 207538
Alignment:
Q  135 tatgctatttagtacaaagagttgtcaaatagtggctat 173  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  207500 tatgctatttagtacaaagtattgtcaaatagtggctat 207538  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 47789196 - 47789233
Alignment:
Q  139 ctatttagtacaaagagttgtcaaatagtggctatagc 176  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  47789196 ctatttagtacaaactgttgtcaaatagtggctatagc 47789233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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