View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_119 (Length: 213)
Name: NF10179_low_119
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_119 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 9829477 - 9829301
Alignment:
| Q |
17 |
cataggggaaagcatcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattg |
116 |
Q |
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| T |
9829477 |
cataagggtaagcatctgcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattg |
9829378 |
T |
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| Q |
117 |
gtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatct |
193 |
Q |
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| T |
9829377 |
gtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatct |
9829301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 9756022 - 9755847
Alignment:
| Q |
16 |
gcataggggaaagcatcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttatt |
115 |
Q |
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| T |
9756022 |
gcataagggcaagcattggcgaagtttttcaacaaacgatgatgatgaactagaagaggatttgacatacagtgaggaaggaaacatgaatgattttatt |
9755923 |
T |
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| Q |
116 |
ggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaat |
191 |
Q |
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| T |
9755922 |
gttgatgattttgatgcatctgattgtgaaggcatgtctaatacttcacaagatgagtctaatagtgacgcagaat |
9755847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 9708628 - 9708475
Alignment:
| Q |
30 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
129 |
Q |
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| T |
9708628 |
atcagcagagtattccaaaaaatgatgatgatgacctaggagtggatttgtcatatagtgaggaagataaccttagtgattttattgttgatgatgttga |
9708529 |
T |
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| Q |
130 |
tgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtga |
183 |
Q |
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| T |
9708528 |
tgcatctgattgtgaagacatatctgataagtcacaggaagagtctaatagtga |
9708475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 9814122 - 9814011
Alignment:
| Q |
79 |
gacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaat |
178 |
Q |
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| T |
9814122 |
gacacacaatgaggaagaaaacaatagtgattttattg---attattttgatgcatctgattgtgaaggcatgtctaataattcacgagatgagtctagc |
9814026 |
T |
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| Q |
179 |
agtgacgcggaatct |
193 |
Q |
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| T |
9814025 |
agtgacgcagaatct |
9814011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 9755380 - 9755264
Alignment:
| Q |
30 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
129 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9755380 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttga |
9755281 |
T |
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| Q |
130 |
tgcatctgattgtgaag |
146 |
Q |
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| T |
9755280 |
tttatctggttgtgaag |
9755264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 9828855 - 9828739
Alignment:
| Q |
30 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
129 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9828855 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttga |
9828756 |
T |
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| Q |
130 |
tgcatctgattgtgaag |
146 |
Q |
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| T |
9828755 |
tgtatctagttgtgaag |
9828739 |
T |
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