View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_122 (Length: 208)
Name: NF10179_low_122
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_122 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 17722309 - 17722132
Alignment:
| Q |
12 |
aagcataggcttttaggtgaacattcttagcaacgggctatgtcgtatcaaaaagggactttaacaaatattaaaacataaggttcaaacattcatatca |
111 |
Q |
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| T |
17722309 |
aagcagaggctttaagtcgaacattcttagcaacaggctatctcctatcaaaaagggactttaacaaatatgaaaacataaggttcaaacattcatatca |
17722210 |
T |
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| Q |
112 |
ctgacttccaaattcaaagtcttccactgctttttctaagccaacgtcttttgaattatttattttttcatgtttttc |
189 |
Q |
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| T |
17722209 |
ctgatttcaaaattcaaagtcttccattgctttttccaagccaacgtcttttgaattatttcttttttcatgtttttc |
17722132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 19023538 - 19023361
Alignment:
| Q |
12 |
aagcataggcttttaggtgaacattcttagcaacgggctatgtcgtatcaaaaagggactttaacaaatattaaaacataaggttcaaacattcatatca |
111 |
Q |
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| T |
19023538 |
aagcagaggctttaagtcgaacattcttagcaacaggctatctcctatcaaaaagggactttaacaaatatgaaaacataaggttcaaacattcatatca |
19023439 |
T |
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| Q |
112 |
ctgacttccaaattcaaagtcttccactgctttttctaagccaacgtcttttgaattatttattttttcatgtttttc |
189 |
Q |
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| T |
19023438 |
ctgatttcaaaattcaaagtcttccattgctttttccaagccaacgtcttttgaattatttcttttttcatgtttttc |
19023361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 19460027 - 19460157
Alignment:
| Q |
18 |
aggcttttaggtgaacattcttagcaacgggctatgtcgtatcaaaaagggactttaacaaatattaaaacataaggttcaaacattc---atatcactg |
114 |
Q |
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| T |
19460027 |
aggctttaaggcgaacattctcagcaacgggctatgtcctatcaaaaagggactttagcaaatattaaaacataagattcaaacattcataatatcactg |
19460126 |
T |
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| Q |
115 |
acttccaaattcaaagtcttccactgctttt |
145 |
Q |
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| T |
19460127 |
acatcaaaattcaaagtcttccactactttt |
19460157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 18114670 - 18114744
Alignment:
| Q |
76 |
caaatattaaaacataaggttcaaacattcata---tcactgacttccaaattcaaagtcttccactgctttttc |
147 |
Q |
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| T |
18114670 |
caaatattaaaacataagattcaaacattcataatatcactgacttcaaaattcaaagtcttccactgttttttc |
18114744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 16675622 - 16675677
Alignment:
| Q |
32 |
acattcttagcaacgggctatgtcgtatcaaaaagggactttaacaaatattaaaa |
87 |
Q |
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| T |
16675622 |
acattctgagcaacgggctatgtcctatcacaaacggactttagtaaatattaaaa |
16675677 |
T |
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