View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_13 (Length: 453)
Name: NF10179_low_13
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 31407412 - 31407838
Alignment:
| Q |
17 |
catgcaagattgagtgtcatggttcattgaaaccaaagcccaattagtgacaacaccgccaactcttccattcttcacaatcaaatcctcagcagctaca |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31407412 |
catgcaggattgagtgtcatggttcattgaaaccaaagcccagttagtgacaacaccaccaactctttcattcttcacaatcaaatcctcagcagctaca |
31407511 |
T |
|
| Q |
117 |
gcattgaaaagcttcacgtttggccttgctagtagcttgctcatgattgtggaagtgaagagagcagcgtgcttgatcactacatagtcgtcctgttcgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31407512 |
gcattgaaaagcttcacgtttggccttgctagtagcttgctcatgatggtggaagtgaagagagcagcatgcttgatcactacatagtcgtcctgttcat |
31407611 |
T |
|
| Q |
217 |
catactcaatttcaagctcgtccaagaaatgatgtgctggcttacgcacaacctgcatgacacacatcaattgacaaaatcaaatatcactttcacataa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31407612 |
catactcaatttcaagctcgtccaagaaatgatgtgctggcttacgcacaacctgcatgacacacatcaattcacacaatcaaatatcactttcacataa |
31407711 |
T |
|
| Q |
317 |
tcttggtttcaatttcattatattgtgattcaaacagttcatttgctcgtttc------tccacaagaaatattgttcatccctaggaactcattgaata |
410 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407712 |
tcttggtttcaatttcatcatattgtg-----aacagttcatttgctcgtttctataagtccacaagaaatattgttcatccctaggaactcattgaata |
31407806 |
T |
|
| Q |
411 |
agttaatccgtgatcctttaagtctcattcat |
442 |
Q |
| |
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||||||||||||| |||||||||||||||||| |
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| T |
31407807 |
agttaatccgtgaccctttaagtctcattcat |
31407838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 47481514 - 47481722
Alignment:
| Q |
17 |
catgcaagattgagtgtcatggttcattgaaaccaaagcccaattagtgacaacaccgccaactcttccattcttcacaatcaaatcctcagcagctaca |
116 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||||||||| || || |||||||| ||||||| | |||||||||||||||||||||||| ||| |
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| T |
47481514 |
catgcaagattgtgtatcatggttcatcgaaaccaaagcccagtttgtaacaacaccagcaactctgttttccttcacaatcaaatcctcagcagcaaca |
47481613 |
T |
|
| Q |
117 |
gcattgaaaagcttcacgtttggccttgctagtagcttgctcatgattgtggaagtgaagagagcagcgtgcttgatcactacatagtcgtcctgttcgt |
216 |
Q |
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||||||||||| || || || || |||| || |||||||||||||| || |||||||| ||||||||||| ||||| || || ||||| || ||||||| |
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| T |
47481614 |
gcattgaaaagttttacattaggttttgcaagaagcttgctcatgatggttgaagtgaatagagcagcgtgtttgatgacaacgtagtcttcttgttcgt |
47481713 |
T |
|
| Q |
217 |
catactcaa |
225 |
Q |
| |
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|||| |||| |
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|
| T |
47481714 |
catattcaa |
47481722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 4220584 - 4220543
Alignment:
| Q |
152 |
cttgctcatgattgtggaagtgaagagagcagcgtgcttgat |
193 |
Q |
| |
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|
| T |
4220584 |
cttgctcatgattgtggaagttaagagagcagcgtgcttgat |
4220543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 4220500 - 4220463
Alignment:
| Q |
379 |
aatattgttcatccctaggaactcattgaataagttaa |
416 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
4220500 |
aatattgttcatccctatgaactcattgaataagttaa |
4220463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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