View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_low_15 (Length: 433)
Name: NF10179_low_15
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_15 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| |
|
| [»] chr1 (18 HSPs) |
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|
Alignment Details
Target: scaffold0312 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 10449 - 10863
Alignment:
| Q |
19 |
tttttggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10449 |
tttttggaaaaggacttgcatcatggaacaaaactgaacttgcaattcactaagaccacttcaaatgcggcaacattcttgccgcgccaagttgctaatt |
10548 |
T |
|
| Q |
119 |
caatacccttttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttga |
218 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||| |
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|
| T |
10549 |
caatacctttttcattaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgttcagattgtgaagaacaccatcagtga |
10648 |
T |
|
| Q |
219 |
gtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10649 |
gtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgag |
10748 |
T |
|
| Q |
319 |
gctgtttcaacagaagtgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10749 |
gctgtttcaacagaagtgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtc |
10848 |
T |
|
| Q |
419 |
acaaagagaattacc |
433 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10849 |
acaaagagaattacc |
10863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 420122 - 419708
Alignment:
| Q |
19 |
tttttggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
420122 |
tttttggaaaaggacttgcatcatggaacaaaactgaacttgcaattcactaagaccacttcaaatgcggcaacattcttgccgcgccaagttgctaatt |
420023 |
T |
|
| Q |
119 |
caatacccttttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttga |
218 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||| |
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|
| T |
420022 |
caatacctttttcattaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgttcagattgtgaagaacaccatcagtga |
419923 |
T |
|
| Q |
219 |
gtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419922 |
gtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgag |
419823 |
T |
|
| Q |
319 |
gctgtttcaacagaagtgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419822 |
gctgtttcaacagaagtgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtc |
419723 |
T |
|
| Q |
419 |
acaaagagaattacc |
433 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
419722 |
acaaagagaattacc |
419708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 975043 - 975453
Alignment:
| Q |
23 |
tggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaat |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
975043 |
tggaaaaggacctgcatcatggaacaaaactgaacttgcaattctctaagaccacttcaaatgcagccacattcttgccgcgccaagttgctaattcaat |
975142 |
T |
|
| Q |
123 |
acccttttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttgagtgt |
222 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||| |
|
|
| T |
975143 |
acccttttcatcaaacaagatggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgttcagattgtgaagaacaccatcagtgagtgt |
975242 |
T |
|
| Q |
223 |
gaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
975243 |
gaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcacgacttctaaacttggtaaaaatgttgaggctg |
975342 |
T |
|
| Q |
323 |
tttcaacagaagtgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaa |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975343 |
tttcaacagaagtgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaa |
975442 |
T |
|
| Q |
423 |
agagaattacc |
433 |
Q |
| |
|
||||||||||| |
|
|
| T |
975443 |
agagaattacc |
975453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 34 - 433
Target Start/End: Original strand, 960123 - 960531
Alignment:
| Q |
34 |
ttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaat------gcggccacattcttgccgcgccaagttgctaattcaataccct |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| | | | ||||||||| | ||||||||||||| ||||||| |
|
|
| T |
960123 |
ttgcatcatggaacaaaattgaacttgcaattcaaagagacaacttcaaataataatggaacaaaattcttgcctagagaagttgctaattccataccct |
960222 |
T |
|
| Q |
128 |
tttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttgagtgtgaaga |
227 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| ||| | |||||| ||| || | ||||||||||| |
|
|
| T |
960223 |
tttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaagagaacaataagtgagtgtgaagc |
960322 |
T |
|
| Q |
228 |
gcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttca |
327 |
Q |
| |
|
| || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| ||||||||| |
|
|
| T |
960323 |
aaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctgtttca |
960422 |
T |
|
| Q |
328 |
acagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaag |
424 |
Q |
| |
|
||||||||| | ||| | ||||| ||| ||||||||| ||||||| ||||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
960423 |
acagaagtggataaaaatagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaag |
960522 |
T |
|
| Q |
425 |
agaattacc |
433 |
Q |
| |
|
||||||||| |
|
|
| T |
960523 |
agaattacc |
960531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 107 - 433
Target Start/End: Original strand, 942241 - 942570
Alignment:
| Q |
107 |
aagttgctaattcaatacccttttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaa |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| ||| | |||||| ||| |
|
|
| T |
942241 |
aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaagag |
942340 |
T |
|
| Q |
207 |
caccgtcgttgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggt |
306 |
Q |
| |
|
|| | ||||||||||| | || |||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || |
|
|
| T |
942341 |
aacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcgga |
942440 |
T |
|
| Q |
307 |
aaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaaca |
403 |
Q |
| |
|
|| |||||||| |||||||||||||||||| | ||| | ||||| ||| ||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
942441 |
aacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaaca |
942540 |
T |
|
| Q |
404 |
aagctgttgtgtgtcacaaagagaattacc |
433 |
Q |
| |
|
|| || |||||||||||||||||||||||| |
|
|
| T |
942541 |
aaactattgtgtgtcacaaagagaattacc |
942570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 924236 - 924395
Alignment:
| Q |
239 |
aaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaa |
338 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
924236 |
aaggagaggaaaagagttgtgtaacatcattagagtcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagtgaa |
924335 |
T |
|
| Q |
339 |
caaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaa |
398 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
924336 |
caaagaaagtgatatacaacaatatataatagcaaaaggagttaagaagttgggtgagaa |
924395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 107 - 433
Target Start/End: Original strand, 949230 - 949559
Alignment:
| Q |
107 |
aagttgctaattcaatacccttttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaa |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| ||| | |||||| ||| |
|
|
| T |
949230 |
aagttgctaattccatacccttttcatcaaacaaattggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaagag |
949329 |
T |
|
| Q |
207 |
caccgtcgttgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggt |
306 |
Q |
| |
|
|| | ||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || |
|
|
| T |
949330 |
aacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcaaaactcgga |
949429 |
T |
|
| Q |
307 |
aaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaaca |
403 |
Q |
| |
|
|| |||||||| ||| |||| ||||||||| | ||| | ||||| ||| ||||||||| |||||| |||||||| || |||||||||||||||| |
|
|
| T |
949430 |
aacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaaca |
949529 |
T |
|
| Q |
404 |
aagctgttgtgtgtcacaaagagaattacc |
433 |
Q |
| |
|
|| || |||||||||||||||||||||||| |
|
|
| T |
949530 |
aaactattgtgtgtcacaaagagaattacc |
949559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 107 - 433
Target Start/End: Original strand, 971511 - 971840
Alignment:
| Q |
107 |
aagttgctaattcaatacccttttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaagggtcaaagggtgctcagattgtggagaa |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| ||| | |||||| ||| |
|
|
| T |
971511 |
aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagttttccatcaaggaaggatcaaaggaagctgaaattgtgaagag |
971610 |
T |
|
| Q |
207 |
caccgtcgttgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggt |
306 |
Q |
| |
|
|| | ||||||||||| | || |||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || |
|
|
| T |
971611 |
aacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcgga |
971710 |
T |
|
| Q |
307 |
aaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaaca |
403 |
Q |
| |
|
|| |||||||| |||||||||||||||||| | ||| | ||||| ||| ||||||||| |||||| |||||||| || |||||||||||||||| |
|
|
| T |
971711 |
aacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaaca |
971810 |
T |
|
| Q |
404 |
aagctgttgtgtgtcacaaagagaattacc |
433 |
Q |
| |
|
|| || |||||||||||||||||||||||| |
|
|
| T |
971811 |
aaactattgtgtgtcacaaagagaattacc |
971840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 216 - 433
Target Start/End: Original strand, 936430 - 936650
Alignment:
| Q |
216 |
tgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgtt |
315 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
936430 |
tgagtgtgaagaaaatggcatcaaaggagaggaaaagctttgtgtaacatcattggaatctatggttgatttcactacttcgaaacttggaaacaatgtc |
936529 |
T |
|
| Q |
316 |
gaggctgtttcaacagaagtgaacaaagaa---agtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttg |
412 |
Q |
| |
|
|| |||||||||||||||||||| |||||| ||| | || ||| ||||| ||| ||| || |||||||| ||||| || ||||| |||||||| | |
|
|
| T |
936530 |
gaagctgtttcaacagaagtgaaaaaagaaagcagtgacttgcaagaatatgtaatggcaaaaggtgtgaagaaattgggagaaaagaataaagctgtag |
936629 |
T |
|
| Q |
413 |
tgtgtcacaaagagaattacc |
433 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
936630 |
tgtgtcacaaagagagttacc |
936650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 916185 - 916344
Alignment:
| Q |
239 |
aaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaa |
338 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| ||| |
|
|
| T |
916185 |
aaggagaggaaaagagttgtgtaacatcattagaatcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagcgaa |
916284 |
T |
|
| Q |
339 |
caaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaa |
398 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
916285 |
caaagaaagtgataaacaacaatatataatagcaaaaggagttaagaagttgagtgagaa |
916344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 235 - 386
Target Start/End: Original strand, 909699 - 909850
Alignment:
| Q |
235 |
atcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaag |
334 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| || ||||| || |||||||| ||||||||||||||| |
|
|
| T |
909699 |
atcaaaggagaggaaaagctttgtgtgacatcattggaatctatgattgatttcactactttgaagcttggaaacaatgttgacactgtttcaacagaag |
909798 |
T |
|
| Q |
335 |
tgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaa |
386 |
Q |
| |
|
| || ||||||| ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
909799 |
taaatggagaaagtggtttacaacaatatgtaatagcaaacggagtgaagaa |
909850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 924022 - 924149
Alignment:
| Q |
25 |
gaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaatac |
124 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| |||||||||| |||||| | ||| || ||||||||||| || ||||||||||||| |||| |
|
|
| T |
924022 |
gaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacctcagattatggagcaacattcttgcctcgtgaagttgctaattccatac |
924121 |
T |
|
| Q |
125 |
ccttttcatcaaacaaggtggaatacat |
152 |
Q |
| |
|
| |||||||||||||| |||||| |||| |
|
|
| T |
924122 |
cattttcatcaaacaaagtggaaaacat |
924149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 936236 - 936296
Alignment:
| Q |
25 |
gaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatg |
85 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||| || |||| |||||||| |
|
|
| T |
936236 |
gaaaaggatttgcatcaaggaacaaagttgaacttgcaattcacaaaaaccaattcaaatg |
936296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 942174 - 942208
Alignment:
| Q |
34 |
ttgcatcatggaacaaaattgaacttgcaattcac |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
942174 |
ttgcatcatggaacaaaattgaacttgcaattcac |
942208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 971444 - 971478
Alignment:
| Q |
34 |
ttgcatcatggaacaaaattgaacttgcaattcac |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
971444 |
ttgcatcatggaacaaaattgaacttgcaattcac |
971478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 901770 - 901895
Alignment:
| Q |
22 |
ttggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaa |
121 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||| ||||||||| |||||| | ||| | ||||| ||||| || ||||||||||||| | |
|
|
| T |
901770 |
ttggaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatgaagtaacatttttgcctcgtgaagttgctaattcca |
901869 |
T |
|
| Q |
122 |
tacccttttcatcaaacaaggtggaa |
147 |
Q |
| |
|
| ||||||||||||||||| |||||| |
|
|
| T |
901870 |
ttcccttttcatcaaacaaagtggaa |
901895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 909486 - 909539
Alignment:
| Q |
22 |
ttggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagacc |
75 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| | |||||||| |||||| |
|
|
| T |
909486 |
ttggaaaaggacttgcatcatggtacaaaattcaacatacaattcacaaagacc |
909539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 949151 - 949183
Alignment:
| Q |
34 |
ttgcatcatggaacaaaattgaacttgcaattc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
949151 |
ttgcatcatggaacaaaattgaacttgcaattc |
949183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 915980 - 916098
Alignment:
| Q |
25 |
gaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaatac |
124 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||||||||| |||||| | || ||||||||||| || |||| |||||||| |||| |
|
|
| T |
915980 |
gaaaaggacttgcacaatggtacaaaattgaacatgcaattcacaaagacc---------ggagcaacattcttgcctcgtgaagtcgctaattccatac |
916070 |
T |
|
| Q |
125 |
ccttttcatcaaacaaggtggaatacat |
152 |
Q |
| |
|
| |||||||||||||| |||||| |||| |
|
|
| T |
916071 |
cattttcatcaaacaaagtggaaaacat |
916098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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