View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_19 (Length: 427)
Name: NF10179_low_19
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 34719736 - 34720138
Alignment:
| Q |
12 |
agagagagatagtaaacatagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagattt |
111 |
Q |
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| T |
34719736 |
agagacagatagtaaacatagtcattacaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagattt |
34719835 |
T |
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| Q |
112 |
aaactatttggggtgagaacaatcctgttagtccaaccagtgaaaacacgactcaaggttctaagaacattgaaattcttgaaagcggtcgctatcttca |
211 |
Q |
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| T |
34719836 |
aaactatttggggtgagaacaatcatgttagtccaactagtgaaaacacgactcaaggttctaagaacattgaaattcttgaaagcggttgctatcttca |
34719935 |
T |
|
| Q |
212 |
cagtc-taagtttgagatccacatgctggaatcgacatgttgatcaagatcactgtgccaatattctaatgaggttagaggaatatgctgattcgt--tg |
308 |
Q |
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| T |
34719936 |
cagtcttgagtttgagatccacatgctggaatcgacatgttgatcaagatcaccgtgccaatattctgatgaggttagaggaatacgctgactcgttgtg |
34720035 |
T |
|
| Q |
309 |
tgtgttatggcttgagcagtactggttgtacgatcagaatgtactagagaaacggatttggttgcatatgaatcccacggactggttgacagaagagagg |
408 |
Q |
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| T |
34720036 |
tgtgttatggcttgagcagtactggttgtacgatcagaatgtactagagaaacggatttggttgcatatgaatcccacggactggttgacagaagagagg |
34720135 |
T |
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| Q |
409 |
aag |
411 |
Q |
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| T |
34720136 |
aag |
34720138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 34729251 - 34729392
Alignment:
| Q |
17 |
gagatagtaaacatagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaact |
116 |
Q |
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|||||| ||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| |||| || ||||| |
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| T |
34729251 |
gagataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatggaatctagcttgcctataaatttattaggttgaaact |
34729350 |
T |
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| Q |
117 |
atttggggtgagaacaatcctgttagtccaaccagtgaaaac |
158 |
Q |
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| T |
34729351 |
atttagagtaagaacattcatattaatccaaatagtgaaaac |
34729392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 34729519 - 34729608
Alignment:
| Q |
318 |
gcttgagcagtactggttgtacgatcagaatgtactagagaaacggatttggttgcatatgaatcccacggactggttgacagaagagag |
407 |
Q |
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| T |
34729519 |
gcttgaacagcactggttggacgattagaatgttctagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagag |
34729608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 34725200 - 34725272
Alignment:
| Q |
30 |
tagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttg |
103 |
Q |
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| T |
34725200 |
tagttattacaacgaaaatttaggtcctacaaataagaaatcgtgagat-gaatcttcgttgcctgtaagtttg |
34725272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 34725483 - 34725551
Alignment:
| Q |
339 |
cgatcagaatgtactagagaaacggatttggttgcatatgaatcccacggactggttgacagaagagag |
407 |
Q |
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| T |
34725483 |
cgattagaatgttcttgagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagag |
34725551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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