View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_2 (Length: 599)
Name: NF10179_low_2
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 359
Target Start/End: Complemental strand, 22215457 - 22215120
Alignment:
| Q |
22 |
ttgcatctccatgacaactacttcgataggaaaagtgattctatccacattctctaccacaccttcaacacatttgcttgaaccaataacaagttatatt |
121 |
Q |
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| T |
22215457 |
ttgcatctccatgacaactacttcgataggaaaagtgattctatccacattctctaccacaccttcaacacatttgcttgaaccaataacaagtcatatt |
22215358 |
T |
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| Q |
122 |
cttatttcacatggattaagttctaaccctcaaattttcttaaaaagtgacagtgacatcatgtttgcgcctgatacgaggtcgcacatcacttctccca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22215357 |
cttatttcacatggattaagttctaaccctcaaattttcttaaaaagtgacagtgacatcatgtttgcgcttgatacgaggtcgcacatcacttctccca |
22215258 |
T |
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| Q |
222 |
gatataaatccttgatcgtaacaggtatgttaaaccatcctggatcttccttcttttgtggaggtttttctttaaaaactgtacgacaccctttgataac |
321 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22215257 |
gataaaattccttgatcgtaacaggtatgttaaaccatcctggatcttccttcttttgtggaggtttttctttaaaaactgtacgacaccctttgataac |
22215158 |
T |
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| Q |
322 |
atcgaccattacatcttctaatggattaccatatggta |
359 |
Q |
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| T |
22215157 |
atcgaccattacatcttctaatggattaccatatggta |
22215120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 26166902 - 26166977
Alignment:
| Q |
158 |
ttcttaaaaagtgacagtgacatcatgtttgcgcctgatacgaggtcgcacatcacttctcccagatataaatcctt |
234 |
Q |
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| T |
26166902 |
ttcttaaaaattgacagtgacat-atgtttgcgcttgatctgaggtcgcgtatcacttctcctaaataaaaatcctt |
26166977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 28923549 - 28923601
Alignment:
| Q |
164 |
aaaagtgacagtgacatcatgtttgcgcctgatacgaggtcgcacatcacttc |
216 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||| |
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| T |
28923549 |
aaaagtgatagtgacatcatgtttacgctggatacgaggtcacacattacttc |
28923601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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