View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_21 (Length: 416)
Name: NF10179_low_21
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 3751611 - 3752003
Alignment:
| Q |
9 |
aatgaagatggatatataaaccaacaaggcacatgcataaacacgtagcacacacccgtatctatcatgatcttgaaatatactatactatatacagaaa |
108 |
Q |
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| T |
3751611 |
aatgaagatggatatataaaccaacaaggcacatgcataaacacgtagcacacacccgtatctatcatgatcttgaaatatactatactata--cagaaa |
3751708 |
T |
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| Q |
109 |
tagaaatttacaaacagctcactatacctaaatcttgtttcctttctttcatgtgaaccacagaaattaatactcgatcgcacaacacaaattattacac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3751709 |
tagaaatttacaaacagctcactatacctaaatcttgtttcctttctttcatgtgaaccacagaaattaatactcgatcgcacaacacaaattattacac |
3751808 |
T |
|
| Q |
209 |
tccctcccaatctttcgctgtctctgttacaaatataataaactatatgaaccaacctgaaaggttttgcccattctgtatatttatatcttatctgttt |
308 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3751809 |
tccctcccaatctttcgctgtctctattacaaatataataaactatatgaaccaacctgaaaggttttgcccattctgtatatttatatcttatctgttt |
3751908 |
T |
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| Q |
309 |
gattgcatatatatgttatctgctaaccacat---attcactgccttttttatcggtgccaacctacattcatcagaagttgagcatatgtatat |
400 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3751909 |
gattgcatatatatgttatctgctaaccacatataattcactgccttttttatcggtgccaacctacattcatcagaagttgagcatatgtatat |
3752003 |
T |
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