View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_22 (Length: 413)
Name: NF10179_low_22
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 916133 - 916528
Alignment:
| Q |
1 |
aggatttgatttaatcttgcgacagaacaacatgtgagcttttattgcttcttccattgcaaatgtctttttccctctaatagcttcatctctaacagct |
100 |
Q |
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| T |
916133 |
aggatttgatttaatcttacgacagaacaacatgtgagcttttattgcttcttccattgcaaatgtctttttccctctaatagcttcatctctaacagct |
916232 |
T |
|
| Q |
101 |
tctgaacacaacccacataaccattttccatcaaattttgacttcacttcactgatgtagtcttgagtgcaatcctctttcaagccacaacactcacact |
200 |
Q |
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| T |
916233 |
tctgaacacaacccacataaccattttccatcaaattttgacttcacttcactgatgtagtcttgagtgcaatcctctttcaagccgcaacactcacact |
916332 |
T |
|
| Q |
201 |
tcgctgattcgatttccatatcgaatgaaaaaagccgttggtatcttatctaaggttgaagtttttataaggatgagaatatttgaatgaagaagaacga |
300 |
Q |
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| T |
916333 |
tcgctgattcgatttccatatcgaatgaaaaaagccgttggtatcttatctaaggttgaagtttttataaggatgagaatatttgaatgaagaagaacga |
916432 |
T |
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| Q |
301 |
cagaatattgcaacccacgtgttagttagttattttggttggattcaagttcaatgacgagtgatgacaaagaagggttttatttatatctggtat |
396 |
Q |
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| T |
916433 |
cagaatattgcaacccacgtgttagttagttattttggttggattcaagttcaatgatgagtgatgacaaagaagggttttatttatatctggtat |
916528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 46870290 - 46870155
Alignment:
| Q |
84 |
cttcatctctaacagcttctgaacacaacccacataaccattttccatcaaattttgacttcacttcactgatgtagtcttgagtgcaatcctctttcaa |
183 |
Q |
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| T |
46870290 |
cttcatctctcactgcttctgaacacaacccacataaccattttccatcaaatttggatttcacatcggttatgtagtcttgagtgcaatcttctttcaa |
46870191 |
T |
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| Q |
184 |
gccacaacactcacacttcgctgattcgatttccat |
219 |
Q |
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| T |
46870190 |
accacagcattcacactttgctgattcaatatccat |
46870155 |
T |
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