View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_low_24 (Length: 403)
Name: NF10179_low_24
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 48408293 - 48407888
Alignment:
| Q |
1 |
tatattcataaatttgaaacta----ttgttttattgaaaggctggatagaccatggttttggtctccagaagtgtaactcttgacgtaagaatgtataa |
96 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48408293 |
tatattcataaatttgaaactactccttgttttattgaaaggctggatagaccatggttttggtctccagaagtgtaactcttgacgtaagaatgtataa |
48408194 |
T |
|
| Q |
97 |
agctagatactatctgaggtgtaattttctcgattcaaattttgaacataatcatagttttgtttggagaagcatttataaatcaaaattcatcttaaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48408193 |
agctagatactatctgaggtgtaattttctcgattcaaattttgaacataattctaattttgtttggagaagcatttgtaaatcaaaattcatcttaaaa |
48408094 |
T |
|
| Q |
197 |
gccggaagtcggtggagcgtgggtgatggtaaatctatcccagttttgagtaataattgaatttttggtggacaccatatcaatccacaccatgaaagta |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
48408093 |
gccggaagtcggtggagcgtgggtgatggtaaatctatcccagttttgagtgataattgaatttttggtggacaccatatcattccacaccatgaaggta |
48407994 |
T |
|
| Q |
297 |
tgttttccctagctgaattaaaagtagcagattgtatgattcatgagtataaagcttggaatgtcccattcattagttcgatttttatcatgaaactgcc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48407993 |
tgttttccctagctgaattaaaagtagcagattgtatgattcatgagtataaagcttggaatgtcccattcattagttcgatttttatcatgaaactgcc |
48407894 |
T |
|
| Q |
397 |
tccagt |
402 |
Q |
| |
|
|||||| |
|
|
| T |
48407893 |
tccagt |
48407888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University