View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_25 (Length: 399)
Name: NF10179_low_25
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 8457622 - 8457241
Alignment:
| Q |
1 |
tcaatattctaaaggtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457622 |
tcaatattctaaaggtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcc |
8457523 |
T |
|
| Q |
101 |
tatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457522 |
tatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaa |
8457423 |
T |
|
| Q |
201 |
gatacaacaggaggaacatgggattcaaattcgaataaaatgaaaatatatttgaatgtatcatatatgttaccagtccaccagtagatgatgttacagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457422 |
gatacaacaggaggaacatgggattcaaattcgaataaaatgaaaatatatttggatgtatcatatatgttaccagtccaccagtagatgatgttacagc |
8457323 |
T |
|
| Q |
301 |
acgttcatcccacggtaatggaattccatcaaaacgattatacatccctccatgtccttgggtggtaccaacacgatgattg |
382 |
Q |
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| T |
8457322 |
acgttcatcccacggtaatggaattccatcaaaacgattatacatccctccatgtccttgggtggtaccaacacgatgattg |
8457241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 6827728 - 6827925
Alignment:
| Q |
20 |
gtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcaca |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6827728 |
gtgtagcacatcttacccttt-gcataatcaaaacgaaaatcctgaaagcccacattatggcgaagccactgaagccatcctatgatatcctttctcaca |
6827826 |
T |
|
| Q |
120 |
aaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaaca |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| || |||||||| |
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| T |
6827827 |
caatcttgagtgtggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaaccagaaatgaacaacgcaaagatacagcaagaggaaca |
6827925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 27964371 - 27964568
Alignment:
| Q |
20 |
gtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcaca |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964371 |
gtgtagcacatcttacccttt-gcataatcaaaacgaaaatcctgaaagcccacattatggcgaagccactgaagccatcctatgatatcctttctcaca |
27964469 |
T |
|
| Q |
120 |
aaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaaca |
218 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| | || |||||||| |
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| T |
27964470 |
caatcttgagtgtggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaacctgaaatgaacaacgcaaagatatagcaagaggaaca |
27964568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 9822416 - 9822258
Alignment:
| Q |
20 |
gtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatgatatcctttctcaca |
119 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9822416 |
gtgtagcacatcttacccttt-gcataatcaaaacgaaaatcctgaaagcccacattatggcaaagccactgaagccatcctatgatatcctttctcaca |
9822318 |
T |
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| Q |
120 |
aaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgatta |
179 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9822317 |
aaatcttgagtgtggtcgatatggggaaacccgtggaaaatggccccagtgtttcgatta |
9822258 |
T |
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