View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_27 (Length: 391)
Name: NF10179_low_27
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 43856243 - 43855862
Alignment:
| Q |
10 |
aagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagactcatgttagtgaaaaggttccctaatgtatgtaccaaagcga |
109 |
Q |
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| T |
43856243 |
aagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagactcatgttagtgaaaagattccctaatgtatgtaccaaagcca |
43856144 |
T |
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| Q |
110 |
aaggaaatattgctaaaagctgcaaaatcagagaaataacagaaccattaatattacaaaacagaacaaatagaacagtaaaaatataacaaggattaaa |
209 |
Q |
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| T |
43856143 |
aaggaaatattgctaaaagctgcaaaatcagagaaataacagaaccattaatattacaaaacagaacaaatagaacagtaaaaatataacaaggattaaa |
43856044 |
T |
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| Q |
210 |
ataagtacctgtgaagaagtgagttttggccttttataaagattaagaccccacatgaatgctacaaggagtgtgccaatagcaaattgaaaagcagtga |
309 |
Q |
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| T |
43856043 |
ataagtacctgtgaagaagtgagttttggccttttataaagattaagaccccacatgaatgctacaaggagtgtgccaatagcaaattgaaaagcagtga |
43855944 |
T |
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| Q |
310 |
gagttactggtaaatggtaaaccttcaagacctgtttgttgtagatgttaaagtagatgttaaaggagaaccagaggcaaaa |
391 |
Q |
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| T |
43855943 |
gagttactggtaaatggtaaaccttcaagacctgtttgttgtagatgttaaagtagatgttaaaggagaaccagaggcaaaa |
43855862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 34910098 - 34909985
Alignment:
| Q |
10 |
aagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagactcatgttagtgaaaaggttccctaatgtatgtaccaaagcga |
109 |
Q |
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| T |
34910098 |
aagaaaggctccatagctttaattgtgtgagtaaatgacacagccacctttccaagactcatattggtgaaaagattccccaaagtatgcacgatagcga |
34909999 |
T |
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| Q |
110 |
aaggaaatattgct |
123 |
Q |
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| T |
34909998 |
gtggaaatattgct |
34909985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 780396 - 780307
Alignment:
| Q |
9 |
gaagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagactcatgttagtgaaaaggttccctaatgtatg |
98 |
Q |
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| T |
780396 |
gaagaaaggttccatagatttgatggtgtgagtgaaagatacggcaaccttgccaagactaatgttcgtcaaaaggttccctaatgtatg |
780307 |
T |
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